PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO56130

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

CAMTA

Protein Properties

Length: 1092aa MW: 123151 Da PI: 6.4508

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO56130	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	179.1	5.3e-56	29	145	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlL 102 ++ ++rwl++ ei++iL+n++k++++ e+++ p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK g+++vl+cyYah+een++fqrr+yw+L OMO56130 29 MEAQHRWLRPAEICEILKNYKKFRIAPEPAHMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEENENFQRRSYWML 129 5569*********************************************************************************************** PP CG-1 103 eeelekivlvhylevk 118 e +l++ivlvhy+evk OMO56130 130 EDDLSHIVLVHYREVK 145 ***********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1092 aa Download sequence
MKRRRLVKEA DTVYSIPKLT SKDIEQILME AQHRWLRPAE ICEILKNYKK FRIAPEPAHM 60 PPSGSLFLFD RKVLRYFRKD GHNWRKKKDG KTVKEAHEKL KAGSIDVLHC YYAHGEENEN 120 FQRRSYWMLE DDLSHIVLVH YREVKGNRTN FNRVKENEEA IPYSQESEGT IPNSEMESSI 180 SSSFHPNNGQ LPSQTTDTSL NSVQASDYED AESVYNHQAS SQFQSFLEPQ QSVAVRIDGG 240 FPDPHVPLSH DDYNGKPSGS AFQLTQPDKN TEYNDAGLTY KPQKNLDITS WEDVLGNCTP 300 GVESVQYQPQ FTSTCDTMGQ PFNNSFLRRQ EFEDPLHVQE GQQASEGDSS HLSKWPLDQK 360 LHSDFRFDLS YKNHEQEINH LVHPGKQQNN SIKYNQQTDP SNGKDGYVLK VDSQNHLTLE 420 GKSISSAMRQ HLLDGSSADE GLKKLDSFNR WMSKELGDVD ESHMQPSSGA YWDAVEGQNG 480 VDVSVMPSQG QLDTFFLGPS ISQDQLFSII DFSPNWAYEG SETKVLITGK FLKSNDETKN 540 YKWSCMFGEV EVPAEVIADG VLRCHTPIHN AGRVPFYVTC SNRLACSEVR EFEYRVRHIH 600 DLEAVDRPTS NANDILIMRF GRLLCLGASS PHPNTYDVTD VSEVSNKINS LLEEDNEELL 660 QMLRPNSEEG FVLEKLKEQL LQKLLKEKLR VWLLQKVAEG GKGPSILDED GQGVIHFAAA 720 LGYDWAFEPT IIAGVNVNFR DVNGWTALHW AASYGRERTV ASLISLGAAP GALTDPTPEF 780 PLGKSSADLA SANGHKGISG YLAESYLSSH LISLNLDNQD RNDNSDSRSD VTEEILGRNA 840 APPGYGGASD GPSLKDSLAA VCNATQAAAR IHQVFRVQSF QKRQLEEYGN DKFGMSDERA 900 LSLIAVKSNK PGGQRDEHVH AAASRIQNKF RGWKGRKDFL IIRQRIVKIQ AHVRGHQVRK 960 NYRKITWSVG ILEKVILRWR RKGSGLRGFK REALNEGPST HASPKEDDYD FLKKGRKQTE 1020 ERLQKALARV KSMAQNPAGR DQYSRMKNVV NEIQEKVMYN KAVMGAGVTD LDEDLIDLEK 1080 LLDDDAFMHT AP

Sequence ? help Back to Top

Protein Sequence Length: 1092 aa Download sequence

MKRRRLVKEA DTVYSIPKLT SKDIEQILME AQHRWLRPAE ICEILKNYKK FRIAPEPAHM  60
PPSGSLFLFD RKVLRYFRKD GHNWRKKKDG KTVKEAHEKL KAGSIDVLHC YYAHGEENEN  120
FQRRSYWMLE DDLSHIVLVH YREVKGNRTN FNRVKENEEA IPYSQESEGT IPNSEMESSI  180
SSSFHPNNGQ LPSQTTDTSL NSVQASDYED AESVYNHQAS SQFQSFLEPQ QSVAVRIDGG  240
FPDPHVPLSH DDYNGKPSGS AFQLTQPDKN TEYNDAGLTY KPQKNLDITS WEDVLGNCTP  300
GVESVQYQPQ FTSTCDTMGQ PFNNSFLRRQ EFEDPLHVQE GQQASEGDSS HLSKWPLDQK  360
LHSDFRFDLS YKNHEQEINH LVHPGKQQNN SIKYNQQTDP SNGKDGYVLK VDSQNHLTLE  420
GKSISSAMRQ HLLDGSSADE GLKKLDSFNR WMSKELGDVD ESHMQPSSGA YWDAVEGQNG  480
VDVSVMPSQG QLDTFFLGPS ISQDQLFSII DFSPNWAYEG SETKVLITGK FLKSNDETKN  540
YKWSCMFGEV EVPAEVIADG VLRCHTPIHN AGRVPFYVTC SNRLACSEVR EFEYRVRHIH  600
DLEAVDRPTS NANDILIMRF GRLLCLGASS PHPNTYDVTD VSEVSNKINS LLEEDNEELL  660
QMLRPNSEEG FVLEKLKEQL LQKLLKEKLR VWLLQKVAEG GKGPSILDED GQGVIHFAAA  720
LGYDWAFEPT IIAGVNVNFR DVNGWTALHW AASYGRERTV ASLISLGAAP GALTDPTPEF  780
PLGKSSADLA SANGHKGISG YLAESYLSSH LISLNLDNQD RNDNSDSRSD VTEEILGRNA  840
APPGYGGASD GPSLKDSLAA VCNATQAAAR IHQVFRVQSF QKRQLEEYGN DKFGMSDERA  900
LSLIAVKSNK PGGQRDEHVH AAASRIQNKF RGWKGRKDFL IIRQRIVKIQ AHVRGHQVRK  960
NYRKITWSVG ILEKVILRWR RKGSGLRGFK REALNEGPST HASPKEDDYD FLKKGRKQTE  1020
ERLQKALARV KSMAQNPAGR DQYSRMKNVV NEIQEKVMYN KAVMGAGVTD LDEDLIDLEK  1080
LLDDDAFMHT AP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	6	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	CAMTA family protein

Link Out ? help Back to Top
Ensembl	OMO56130