PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO55490
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 616aa    MW: 66759 Da    PI: 4.9081
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO55490genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS461.74.3e-1412476091374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               lv++L++cAeav++++l+la+al++++  la++++ +m+++a+yf+eALa+r++r    +y    p+++ + + ++ l  +  f+e++P+lkf+h+taNqa
  OMO55490 247 LVHTLMACAEAVQQENLKLADALVKHIGLLATSQAGAMRKVATYFAEALARRIYR----IY----PQDSLDPSYTDML--QMHFYETCPYLKFAHFTANQA 337
               689****************************************************....44....3433332344444..346****************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp..gE 200
               Ilea+++++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++Ae++gv+fef+ +va++l+dle+e+L+++p   E
  OMO55490 338 ILEAFATANRVHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAETIGVEFEFRGFVANSLADLEPEMLEIRPpeVE 438
               *************************************************************************************************9999 PP

      GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
               a+aVn+v++lhrll++++ +e+    vL+ +k ++Pk+++vveqea+hn++ F++rf+eal+yys+lfdsle +  +  +++ ++++ +lgr+i+nvvace
  OMO55490 439 AVAVNSVFELHRLLARTGGIEK----VLSSIKAMKPKILTVVEQEANHNGPVFVDRFTEALHYYSSLFDSLEGSGVAPPSQDLVMSELYLGRQICNVVACE 535
               ********************99....*********************************************777666778899999999************ PP

      GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
               g +r+erhetl +Wr r+e++GF+pv+l+++a+kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+
  OMO55490 536 GMDRVERHETLTQWRTRMEASGFSPVHLGSNAYKQASMLLALFAgGDGYRVEENNGCLMLGWHTRPLIATSAWQ 609
               *************************************************************************6 PP

Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    
MKRDHQEICG ATSYGSGSGS KSESSTISIP NKGKLWEEEQ DAGGMDELLA VLGYKVRASD  60
MADVAQKLEQ LEMVMGTVQE DGISHLSCDT IHYNPSDLSG WVQSMLSELN NPATENLDPV  120
LANSDSNSSI LSQVNPSDPS KSHHQQQIVS SNHSQVYNDD SEYDLRAIPG VAAYPPAKSS  180
ESDSESTRKR MKTSIGTSSG SSSSAAAAAT YGSSSSSSPQ GIGVSGAVTE STRPVVLVDS  240
QETGVRLVHT LMACAEAVQQ ENLKLADALV KHIGLLATSQ AGAMRKVATY FAEALARRIY  300
RIYPQDSLDP SYTDMLQMHF YETCPYLKFA HFTANQAILE AFATANRVHV IDFGLKQGMQ  360
WPALMQALAL RPGGPPAFRL TGIGPPQPDN TDALQQVGWK LAQLAETIGV EFEFRGFVAN  420
SLADLEPEML EIRPPEVEAV AVNSVFELHR LLARTGGIEK VLSSIKAMKP KILTVVEQEA  480
NHNGPVFVDR FTEALHYYSS LFDSLEGSGV APPSQDLVMS ELYLGRQICN VVACEGMDRV  540
ERHETLTQWR TRMEASGFSP VHLGSNAYKQ ASMLLALFAG GDGYRVEENN GCLMLGWHTR  600
PLIATSAWQL ATTESG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein