PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO55490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | GRAS | ||||||||
Protein Properties | Length: 616aa MW: 66759 Da PI: 4.9081 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 461.7 | 4.3e-141 | 247 | 609 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 lv++L++cAeav++++l+la+al++++ la++++ +m+++a+yf+eALa+r++r +y p+++ + + ++ l + f+e++P+lkf+h+taNqa OMO55490 247 LVHTLMACAEAVQQENLKLADALVKHIGLLATSQAGAMRKVATYFAEALARRIYR----IY----PQDSLDPSYTDML--QMHFYETCPYLKFAHFTANQA 337 689****************************************************....44....3433332344444..346****************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp..gE 200 Ilea+++++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++Ae++gv+fef+ +va++l+dle+e+L+++p E OMO55490 338 ILEAFATANRVHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAETIGVEFEFRGFVANSLADLEPEMLEIRPpeVE 438 *************************************************************************************************9999 PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 a+aVn+v++lhrll++++ +e+ vL+ +k ++Pk+++vveqea+hn++ F++rf+eal+yys+lfdsle + + +++ ++++ +lgr+i+nvvace OMO55490 439 AVAVNSVFELHRLLARTGGIEK----VLSSIKAMKPKILTVVEQEANHNGPVFVDRFTEALHYYSSLFDSLEGSGVAPPSQDLVMSELYLGRQICNVVACE 535 ********************99....*********************************************777666778899999999************ PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 g +r+erhetl +Wr r+e++GF+pv+l+++a+kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+ OMO55490 536 GMDRVERHETLTQWRTRMEASGFSPVHLGSNAYKQASMLLALFAgGDGYRVEENNGCLMLGWHTRPLIATSAWQ 609 *************************************************************************6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 616 aa Download sequence |
MKRDHQEICG ATSYGSGSGS KSESSTISIP NKGKLWEEEQ DAGGMDELLA VLGYKVRASD 60 MADVAQKLEQ LEMVMGTVQE DGISHLSCDT IHYNPSDLSG WVQSMLSELN NPATENLDPV 120 LANSDSNSSI LSQVNPSDPS KSHHQQQIVS SNHSQVYNDD SEYDLRAIPG VAAYPPAKSS 180 ESDSESTRKR MKTSIGTSSG SSSSAAAAAT YGSSSSSSPQ GIGVSGAVTE STRPVVLVDS 240 QETGVRLVHT LMACAEAVQQ ENLKLADALV KHIGLLATSQ AGAMRKVATY FAEALARRIY 300 RIYPQDSLDP SYTDMLQMHF YETCPYLKFA HFTANQAILE AFATANRVHV IDFGLKQGMQ 360 WPALMQALAL RPGGPPAFRL TGIGPPQPDN TDALQQVGWK LAQLAETIGV EFEFRGFVAN 420 SLADLEPEML EIRPPEVEAV AVNSVFELHR LLARTGGIEK VLSSIKAMKP KILTVVEQEA 480 NHNGPVFVDR FTEALHYYSS LFDSLEGSGV APPSQDLVMS ELYLGRQICN VVACEGMDRV 540 ERHETLTQWR TRMEASGFSP VHLGSNAYKQ ASMLLALFAG GDGYRVEENN GCLMLGWHTR 600 PLIATSAWQL ATTESG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO55490 |