PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO55483

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

GeBP

Protein Properties

Length: 362aa MW: 40993.2 Da PI: 6.7387

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO55483	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	71.1	2.1e-22	73	165	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +f+r+w+e Dei++L Gl+ s +d+ fy+ ++s+s ++ksql+eK+rrL+kKf+ ++++++g + s ++hdq f+ls ++W OMO55483 73 KFHRIWTEPDEISFLHGLLHS---YSLSFPKDLPIFYSSYSNSMSQPYTKSQLSEKLRRLRKKFRVISSRIARGLSLSSLSAHDQALFDLSTRLWS 165 699**************87...4567788**************************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MDSTPLLPQP QSQSQSQPLS PSASKLPVKR KTPFPHHQFL TPKLEPRPQF THFASLDDDS 60 PLSSSKPKPP PFKFHRIWTE PDEISFLHGL LHSYSLSFPK DLPIFYSSYS NSMSQPYTKS 120 QLSEKLRRLR KKFRVISSRI ARGLSLSSLS AHDQALFDLS TRLWSPEFAS TSPFGKNSSG 180 VNLGFAVDHE NNGIVDGTTN DFEDCYLIDN NDVELKMVDE VNVNCDLGGG GVEVINGGGG 240 IDGVVAKSVL NVFDECFKEV RMAFAMQGAG AVWMDAMERR WKQQRVSELD VFGRRLRLIM 300 ENSLSKNGET FHTRWLLSCD FNSHYDDQFE NAYGSGLKRL FDSNICKFHI FSWNFNVELF 360 DQ

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MDSTPLLPQP QSQSQSQPLS PSASKLPVKR KTPFPHHQFL TPKLEPRPQF THFASLDDDS  60
PLSSSKPKPP PFKFHRIWTE PDEISFLHGL LHSYSLSFPK DLPIFYSSYS NSMSQPYTKS  120
QLSEKLRRLR KKFRVISSRI ARGLSLSSLS AHDQALFDLS TRLWSPEFAS TSPFGKNSSG  180
VNLGFAVDHE NNGIVDGTTN DFEDCYLIDN NDVELKMVDE VNVNCDLGGG GVEVINGGGG  240
IDGVVAKSVL NVFDECFKEV RMAFAMQGAG AVWMDAMERR WKQQRVSELD VFGRRLRLIM  300
ENSLSKNGET FHTRWLLSCD FNSHYDDQFE NAYGSGLKRL FDSNICKFHI FSWNFNVELF  360
DQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	3e-17	GeBP family protein

Link Out ? help Back to Top
Ensembl	OMO55483