PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO55388
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family Trihelix
Protein Properties Length: 658aa    MW: 74154.6 Da    PI: 6.771
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO55388genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.23.3e-16113174268
  trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
               W+++evlaL+++r++me+++ +       We++s+k++e gf+rs+++Ckek+e+ ++++  i+ ++
  OMO55388 113 WSNDEVLALLRIRSSMENWFPEF-----TWEHISRKLAELGFKRSAEKCKEKFEEESRYFNSINCSK 174
               ********************998.....9*******************************9988665 PP
2trihelix94.78.8e-30505598186
  trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
               rW+++evlaLi++r +  ++   +k          k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql 
  OMO55388 505 RWPRDEVLALINLRCSFYNNGDHDKegisggaasIKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQLS 598
               8**************66666665433444444449********************************************8.9999********95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    
MFDGVPDQFH QFIASSAAAA TRATPTLPLP LSFTSHLHLA ASNSSNGFTP FDPFPNSQHH  60
HFLHPLHQTQ KNIDEEKQDN RTSLVVGMNM DIERERSMAP PPGVPIHHHN HPWSNDEVLA  120
LLRIRSSMEN WFPEFTWEHI SRKLAELGFK RSAEKCKEKF EEESRYFNSI NCSKNYRIFS  180
ELEELCTQGE NPNPNPPHDD PVHHQNQQQV VLGGVEKNKN LEKSREDEDN NVGGQDLEDD  240
SRNIDEYQQT DPAPAAGNNN DDDNIGSDHQ ENEKVVEFEN YNKANSSKIN IISCRKRKRQ  300
KKKFEMLKGF CEDIVNKLMN QQEEMHNKLI LDMVKRDQEK VAREEAWKKQ ELDRINLELE  360
VRAKEQAIAG DRQATIIKFL TKFSSSTKKQ CLVRGNIESD PPSITSSSLV PSTAQNPNPV  420
DQVSTATSSA MVLGHQNIAS SAIKPTNQVL QNPNAKTPIS SSSALVPQNP NSISAQSKPS  480
PSPLAKKAAA AQNPTSNDKE DLGKRWPRDE VLALINLRCS FYNNGDHDKE GISGGAASIK  540
APLWERISQG MLELGYKRSA KRCKEKWENI NKYFRKTKDV NKKRSLDSRT CPYFHQLSTL  600
YNQGTLIAPS EAPENRSPML ENHSGLPETG VDSSQRGAKV SEGETNIVHQ VPAFEFEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295302RKRKRQKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.13e-97Trihelix family protein