PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO55248

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Trihelix

Protein Properties

Length: 641aa MW: 70691.9 Da PI: 6.6435

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO55248	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	91.2	1e-28	82	163	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r+++ k+plWeevs+k++e g++rs+k+Ckek+en+ k++k++k+g++++ +t+++fdqlea OMO55248 82 RWPRQETLALLKIRSDMDVTFRDASVKGPLWEEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKTGKSDG-----KTYRFFDQLEA 163 8******************************************************************96.....689****85 PP
2	trihelix	103.6	1.5e-32	469	554	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r++++++++++ k+plWee+s++m++ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a OMO55248 469 RWPKVEVEALIKLRTNLDSKYQENGPKGPLWEEISAAMKKLGYNRNSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 554 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 641 aa Download sequence
MLGGGDTTAS VLGSSSGVVG GGGGAAASTA DVSAAASSGA RDGSSEVAAN MLGGPNGNNN 60 HNLGEDDRSR VDEGDRSFGG NRWPRQETLA LLKIRSDMDV TFRDASVKGP LWEEVSRKLA 120 ELGYHRSAKK CKEKFENVYK YHKRTKTGKS DGKTYRFFDQ LEAFGIGSHP PPPPLQSPAA 180 PPPQLKPQTT MPAAATNNNN NNPQSLPPHV STVPSTTTTL PSLPQNIVPP NINITVPSFP 240 STNPTIQPPP PPTLTNPTTF PNISADLMSN YSTSSSTSSD LELEGRRKRK RKWKDFFERL 300 MKEVIQKQED MQKKFLEAIE KREHERLVRE EAWRMQEMAR INREREILAQ ERSIAAAKDA 360 AVMAFLQKIS EQQNPGQAPQ NNTNPNPILP SQQPQLKPQA AAPQAAPPPP PPQPVSAVAP 420 PAAPPATAAA APVQAPAPPP LVAHQQMMNM EVSKTDNGDQ SYTPPSSSRW PKVEVEALIK 480 LRTNLDSKYQ ENGPKGPLWE EISAAMKKLG YNRNSKRCKE KWENINKYFK KVKESNKKRP 540 EDSKTCPYFH QLDAIYKERN KFDQLKPENS VPLMVRPEQQ WPPPPSEPHQ HDHHHDHVME 600 DMESDQNQDE DDKDGDDEEE DDEGGDYEIV ASKPVSMGGG E

Sequence ? help Back to Top

Protein Sequence Length: 641 aa Download sequence

MLGGGDTTAS VLGSSSGVVG GGGGAAASTA DVSAAASSGA RDGSSEVAAN MLGGPNGNNN  60
HNLGEDDRSR VDEGDRSFGG NRWPRQETLA LLKIRSDMDV TFRDASVKGP LWEEVSRKLA  120
ELGYHRSAKK CKEKFENVYK YHKRTKTGKS DGKTYRFFDQ LEAFGIGSHP PPPPLQSPAA  180
PPPQLKPQTT MPAAATNNNN NNPQSLPPHV STVPSTTTTL PSLPQNIVPP NINITVPSFP  240
STNPTIQPPP PPTLTNPTTF PNISADLMSN YSTSSSTSSD LELEGRRKRK RKWKDFFERL  300
MKEVIQKQED MQKKFLEAIE KREHERLVRE EAWRMQEMAR INREREILAQ ERSIAAAKDA  360
AVMAFLQKIS EQQNPGQAPQ NNTNPNPILP SQQPQLKPQA AAPQAAPPPP PPQPVSAVAP  420
PAAPPATAAA APVQAPAPPP LVAHQQMMNM EVSKTDNGDQ SYTPPSSSRW PKVEVEALIK  480
LRTNLDSKYQ ENGPKGPLWE EISAAMKKLG YNRNSKRCKE KWENINKYFK KVKESNKKRP  540
EDSKTCPYFH QLDAIYKERN KFDQLKPENS VPLMVRPEQQ WPPPPSEPHQ HDHHHDHVME  600
DMESDQNQDE DDKDGDDEEE DDEGGDYEIV ASKPVSMGGG E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	286	291	RRKRKR
2	286	292	RRKRKRK
3	287	292	RKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	2e-65	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OMO55248