PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO54839 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | ERF | ||||||||
Protein Properties | Length: 140aa MW: 15845.4 Da PI: 5.3787 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.3 | 3e-21 | 21 | 72 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdps r r +lg+f+taeeAa+a+++a+ +l+g+ OMO54839 21 HYRGVRRRP-WGKYAAEIRDPS----RpgSRLWLGTFDTAEEAARAYDRAAFNLRGH 72 7********.**********96....355**************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence |
MEDPNKRKEG SKEEKGRDEV HYRGVRRRPW GKYAAEIRDP SRPGSRLWLG TFDTAEEAAR 60 AYDRAAFNLR GHMAILNFPN EYFSNQLMGS SSSGMSNPSG SSSNSSSAAA GSQEKQVFEF 120 EYLDDKVLEE LLETEEEKKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 1e-27 | ERF family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO54839 |