PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO54685

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

HSF

Protein Properties

Length: 382aa MW: 44330.6 Da PI: 4.8424

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO54685	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.2	8.5e-36	46	138	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y+i++d++++++isws+ +nsf+v+d++ fa ++Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+++ll++i+ OMO54685 46 FLTKTYDIIDDSSTNHIISWSRGNNSFIVWDPQAFAMSLLPRFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANERFLRGQRHLLKNIR 133 9**************************************************************999.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ OMO54685 134 RRKTH 138 986 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MNPYGRVKEE FPGASSSSYP AAAMPSMGIP QVQPMEGLHE SGPPPFLTKT YDIIDDSSTN 60 HIISWSRGNN SFIVWDPQAF AMSLLPRFFK HNNFSSFVRQ LNTYGFRKVD PDRWEFANER 120 FLRGQRHLLK NIRRRKTHQT QPSQYGLDPC VEVGRFGLDG EMDRLRRDKQ VLMVELVKLR 180 QQQQNTRTCL QMMEERLRKT ETKQHQMMSF LAKAMQNPSF VQQLVQQKDR RKELEEEITK 240 KRSRRRINQI RSSSNVETIE LDQDEGGMGC FVKTEPEDYG DLADEFGVSE LDQLAMDMQQ 300 GPISGNINLD HDHQHVINDQ IRQDQDGIID KLHLDEGFWD DLLNDDNIEQ EISVLDVDQD 360 HEDEEDVDVL VEQLGYLGSS PK

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MNPYGRVKEE FPGASSSSYP AAAMPSMGIP QVQPMEGLHE SGPPPFLTKT YDIIDDSSTN  60
HIISWSRGNN SFIVWDPQAF AMSLLPRFFK HNNFSSFVRQ LNTYGFRKVD PDRWEFANER  120
FLRGQRHLLK NIRRRKTHQT QPSQYGLDPC VEVGRFGLDG EMDRLRRDKQ VLMVELVKLR  180
QQQQNTRTCL QMMEERLRKT ETKQHQMMSF LAKAMQNPSF VQQLVQQKDR RKELEEEITK  240
KRSRRRINQI RSSSNVETIE LDQDEGGMGC FVKTEPEDYG DLADEFGVSE LDQLAMDMQQ  300
GPISGNINLD HDHQHVINDQ IRQDQDGIID KLHLDEGFWD DLLNDDNIEQ EISVLDVDQD  360
HEDEEDVDVL VEQLGYLGSS PK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-122	HSF family protein

Link Out ? help Back to Top
Ensembl	OMO54685