PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO54647

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

CPP

Protein Properties

Length: 1037aa MW: 115002 Da PI: 6.3374

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO54647	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.4	4.5e-16	481	519	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk OMO54647 481 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 519 689**********************************96 PP
2	TCR	50	6e-16	566	604	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN OMO54647 566 RHKRGCNCKKSSCLKKYCECYQGGVGCSINCRCEGCKNA 604 589***********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 1037 aa Download sequence
MDTPEKTQIS SSLSKFEDSP VFNYINSLSP IKPVKSIHLT QTFNPLSFAS LPSIFTSPHV 60 SAQKESRFLK RHSYADPSKP ELLSGEVTKA STIVEVGNEA GQLCDSSAEL QGNFDPGVSL 120 GEASLELPNE PSRYAMELPR TLKYDCGSPN CDPAPCLIET NCVSESTCTS IVPFVQEASH 180 EKGLSDSGVE VAGVEQKRDS AGCDWESLIS DAADLLIFNS PNDSEAFRCI IQKPMDPGTR 240 FCPTLNSRFP QNDINGVPQT TVDSDEYKDP CTQTEEDGEL KGTYPAHDNF ENTGVDNCMS 300 GSLTDNVETG ISVPFSFKPG SSLHRGFRRR CLDFEMLAAR RKSLDGGSNT SSSVDNQLVP 360 GKPSNDSSRR ILPGIGLHLN ALAITSRDDN NIKHETLSSG TQKLSFPGST ASILTPTAKP 420 EAVHESLNSA SIERDTDPVE NGLQLAEDAS QASTYLRNEE FNQNSPKKKR RRLEQAGEGE 480 SCKRCNCKKS KCLKLYCECF AAGVYCIEPC SCQDCFNKPI HEDTVLATRK QIESRNPLAF 540 APKVIRSADS IPEVGDDSSK TPASARHKRG CNCKKSSCLK KYCECYQGGV GCSINCRCEG 600 CKNAFGRKDG SAIVETEGEP EEEERDPSDK NGIERSLEKT DILNNEEQNP VSALPTTPLQ 660 LCRPLLQLPF SSKGKPPRSF IAIGSSTALY NGQRYGKPNI IRPQNIIEKH FQTVAEDEMP 720 DILRDNCSPN TGVKSSSPNT LKGKLPVSIR LKEKLMHRSS GHLGRYGRED STNWSLNDDI 780 TGEVLCRLPG KTVLVSWEWR RSKDVFHGNF RIRKNNMIFV RNRIHWLTGE HHIITFDVET 840 ELSAVIKLPG RVMQLSHVQD MDRGAICIGA SSGCLHYVCS HPSEIRVWEL KDYGESDQWV 900 LKYNLNLIDL VMENKKRFGQ RDLENFDEFV KVKDETVANY LFSSLAYSEE VVFMKVNTVI 960 FSYDFRSREL KERFCLLVQF HRTPLTDPTV IPYTICLAAA GVLKEIKNVV SGLFQLKQDS 1020 GSRPSIRSCP CCETHPP

Sequence ? help Back to Top

Protein Sequence Length: 1037 aa Download sequence

MDTPEKTQIS SSLSKFEDSP VFNYINSLSP IKPVKSIHLT QTFNPLSFAS LPSIFTSPHV  60
SAQKESRFLK RHSYADPSKP ELLSGEVTKA STIVEVGNEA GQLCDSSAEL QGNFDPGVSL  120
GEASLELPNE PSRYAMELPR TLKYDCGSPN CDPAPCLIET NCVSESTCTS IVPFVQEASH  180
EKGLSDSGVE VAGVEQKRDS AGCDWESLIS DAADLLIFNS PNDSEAFRCI IQKPMDPGTR  240
FCPTLNSRFP QNDINGVPQT TVDSDEYKDP CTQTEEDGEL KGTYPAHDNF ENTGVDNCMS  300
GSLTDNVETG ISVPFSFKPG SSLHRGFRRR CLDFEMLAAR RKSLDGGSNT SSSVDNQLVP  360
GKPSNDSSRR ILPGIGLHLN ALAITSRDDN NIKHETLSSG TQKLSFPGST ASILTPTAKP  420
EAVHESLNSA SIERDTDPVE NGLQLAEDAS QASTYLRNEE FNQNSPKKKR RRLEQAGEGE  480
SCKRCNCKKS KCLKLYCECF AAGVYCIEPC SCQDCFNKPI HEDTVLATRK QIESRNPLAF  540
APKVIRSADS IPEVGDDSSK TPASARHKRG CNCKKSSCLK KYCECYQGGV GCSINCRCEG  600
CKNAFGRKDG SAIVETEGEP EEEERDPSDK NGIERSLEKT DILNNEEQNP VSALPTTPLQ  660
LCRPLLQLPF SSKGKPPRSF IAIGSSTALY NGQRYGKPNI IRPQNIIEKH FQTVAEDEMP  720
DILRDNCSPN TGVKSSSPNT LKGKLPVSIR LKEKLMHRSS GHLGRYGRED STNWSLNDDI  780
TGEVLCRLPG KTVLVSWEWR RSKDVFHGNF RIRKNNMIFV RNRIHWLTGE HHIITFDVET  840
ELSAVIKLPG RVMQLSHVQD MDRGAICIGA SSGCLHYVCS HPSEIRVWEL KDYGESDQWV  900
LKYNLNLIDL VMENKKRFGQ RDLENFDEFV KVKDETVANY LFSSLAYSEE VVFMKVNTVI  960
FSYDFRSREL KERFCLLVQF HRTPLTDPTV IPYTICLAAA GVLKEIKNVV SGLFQLKQDS  1020
GSRPSIRSCP CCETHPP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	466	473	PKKKRRRL
2	467	472	KKKRRR
3	469	473	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	1e-133	CPP family protein

Link Out ? help Back to Top
Ensembl	OMO54647