PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO54485
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 296aa    MW: 31983 Da    PI: 10.4717
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO54485genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-20161209355
       AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+++l+g
  OMO54485 161 YRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRG 209
               9*******.**********32....25*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MQNSAMVNYH PLQNFSFFSN PETPPETIET PSFNKPLCLP GFPSSSSSMN ASTHFHRQNL  60
LPLIRFDNKV YENEVETTII ETPPVLDGIA AVVGQHVLFG NKANPTTPTA GNNRSNGGIL  120
SSTDGGAGLE TPGFVSVSQR FKSNNKRDAG FPAALSVQKT YRGVRKRPWG RWSAEIRDRI  180
GRCRHWLGTF DTAEEAARAY DAAARRLRGS KAKTNFEIPS VLPLSSPSTS SSSTEAKKKV  240
KGKGKIERKC AVVTSVAHLF SSSSFGGNEG KGNVELDLKL GVGVNNKSTT NGQILV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.14e-25ERF family protein