PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO54286 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | C3H | ||||||||
Protein Properties | Length: 264aa MW: 29225.5 Da PI: 9.7542 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.2 | 2.1e-06 | 100 | 112 | 14 | 26 |
--TTTTT-SS-SS CS zf-CCCH 14 tCkyGdrCkFaHg 26 C+yGd+C+F H+ OMO54286 100 NCSYGDKCRFLHV 112 7***********6 PP | |||||||
2 | zf-CCCH | 42 | 1.5e-13 | 163 | 189 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+++ tG C+yG++C+FaHg+ OMO54286 163 WKTKLCNNWKMTGGCPYGNSCCFAHGR 189 8************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence |
MFANNNMNIS SDVYKPMLQC QPQHVIQGKN LGISSHIENP PSKKRRICES FAANQWVPGP 60 GPRAIKEVTT GGFKLTLSGS QLLGFANDSR NLCRIWNGIN CSYGDKCRFL HVNPGKSKGI 120 SMINPLPGVA PLNQDRRSGE FDCKGYVGSL RVGDQGNSKL ASWKTKLCNN WKMTGGCPYG 180 NSCCFAHGRA ELQNNGSYFA LESWVVPTCA LKNVQNDSIK SGNHFKQQLQ ETKVSLKWKR 240 VMKLCDIYAD WLEGMAILPS ASFK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 4e-16 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO54286 |