PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO54286
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C3H
Protein Properties Length: 264aa    MW: 29225.5 Da    PI: 9.7542
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO54286genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.1e-061001121426
               --TTTTT-SS-SS CS
   zf-CCCH  14 tCkyGdrCkFaHg 26 
                C+yGd+C+F H+
  OMO54286 100 NCSYGDKCRFLHV 112
               7***********6 PP

2zf-CCCH421.5e-13163189127
               --S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
               +kt+lC+++  tG C+yG++C+FaHg+
  OMO54286 163 WKTKLCNNWKMTGGCPYGNSCCFAHGR 189
               8************************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MFANNNMNIS SDVYKPMLQC QPQHVIQGKN LGISSHIENP PSKKRRICES FAANQWVPGP  60
GPRAIKEVTT GGFKLTLSGS QLLGFANDSR NLCRIWNGIN CSYGDKCRFL HVNPGKSKGI  120
SMINPLPGVA PLNQDRRSGE FDCKGYVGSL RVGDQGNSKL ASWKTKLCNN WKMTGGCPYG  180
NSCCFAHGRA ELQNNGSYFA LESWVVPTCA LKNVQNDSIK SGNHFKQQLQ ETKVSLKWKR  240
VMKLCDIYAD WLEGMAILPS ASFK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.14e-16C3H family protein