PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO54123

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Trihelix

Protein Properties

Length: 393aa MW: 45169.3 Da PI: 4.4628

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO54123	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.7	2.4e-16	159	243	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+ +L++a e+ + +r++l+ W+ev++k++e ++er+ +qC+++++ l+k+ykk+k++ + t + s+++yf++++ OMO54123 159 WTERETFVLLDAWGERFLQHGRKSLRSEEWQEVAEKVSEvSKIERTDTQCRNRLDTLKKKYKKEKAMLAE-TGATISKWVYFKKMD 243 ***********************************762678**********************9.688889******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MDDIEDDARY PPNPYGVSHQ QGYGASNRQK LSVRNAPYSR PAWNQYVDDD EDEEEEEDEE 60 DLGEEEENHN QNNGVRYVGK DIDDDDDDEL DDEEDEGGSK HKGYNRKSDD VDLERHPKKR 120 KLKSLVSSYE FAPRVPAAAA ATPSVPKTSY GGRNSLTDWT ERETFVLLDA WGERFLQHGR 180 KSLRSEEWQE VAEKVSEVSK IERTDTQCRN RLDTLKKKYK KEKAMLAETG ATISKWVYFK 240 KMDMLMSTPP QQGGLSCGLD SGEYVFMNPR VYLNRANGLD EMRDSPANSE SADSEEDVSD 300 GLPPKKRRFG RQSDEGSSFR LLADSIQKFS DIYEKIENSK RQQMLELEKM RMDFHRELET 360 QKRQIMERAQ AEIAKIQQVD DEENDVSADN ASG

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MDDIEDDARY PPNPYGVSHQ QGYGASNRQK LSVRNAPYSR PAWNQYVDDD EDEEEEEDEE  60
DLGEEEENHN QNNGVRYVGK DIDDDDDDEL DDEEDEGGSK HKGYNRKSDD VDLERHPKKR  120
KLKSLVSSYE FAPRVPAAAA ATPSVPKTSY GGRNSLTDWT ERETFVLLDA WGERFLQHGR  180
KSLRSEEWQE VAEKVSEVSK IERTDTQCRN RLDTLKKKYK KEKAMLAETG ATISKWVYFK  240
KMDMLMSTPP QQGGLSCGLD SGEYVFMNPR VYLNRANGLD EMRDSPANSE SADSEEDVSD  300
GLPPKKRRFG RQSDEGSSFR LLADSIQKFS DIYEKIENSK RQQMLELEKM RMDFHRELET  360
QKRQIMERAQ AEIAKIQQVD DEENDVSADN ASG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-67	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OMO54123