PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO54070

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

CPP

Protein Properties

Length: 556aa MW: 61462.5 Da PI: 7.8191

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO54070	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	39	1.6e-12	122	159	4	42
TCR 4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 k+C Ck+skClk+YCeCfa+g++C+ C+C++C+N+ e+ OMO54070 122 KQCGCKQSKCLKLYCECFASGEYCNG-CNCTECCNNVEN 159 89**********************.******9875 PP
2	TCR	47.9	2.6e-15	204	241	2	39
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 +++gC+Ck+s+C+k+YCeCf+a++ Cs +CkC dCkN OMO54070 204 NERGCHCKRSQCIKRYCECFQANVLCSTNCKCMDCKNF 241 679**********************************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence
MRQVEIENGN FPPKSIEQVV TATPCIALKG IKSVESARDS VKVTIRERSP LHNFPPKRKL 60 ARQLVFTEFG LSPISISSPS LVNSSSEQHL SPQSPLSYKS ESPLPLHSTN MKANNGTPKY 120 PKQCGCKQSK CLKLYCECFA SGEYCNGCNC TECCNNVENE DLRKAVAEII LERNPHAFKP 180 KIASTPCSPQ NGDEATDAAP VGRNERGCHC KRSQCIKRYC ECFQANVLCS TNCKCMDCKN 240 FEACKDTMAA FGKNDSESEI CKKSEGCEGI IATSPRDNGI RKLFKSLKVS EGLNAVNHEN 300 SIDTKIHIQR NTAATSNATG SLGQCLSQES RKRKHLELNL DEKDSLIESF YGFQKVNNLK 360 NRCHSATISI EPTCHNINSA MMGSLRNPYR LMAADVYHLQ DTSDINSGLA VLAEAAALAQ 420 SAKLFTDKVD KADMKNEVER SYKNTLGDKE NNCQWGPVHV QRNVSDDLNV GFGANYGQEG 480 RTLPPGTFNI CNEKHEQFIK PASPNQILNC NINSVYAEQE KCVLTTFLDF LQKLVAFTNI 540 KDDASSYYGD KPVLIS

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence

MRQVEIENGN FPPKSIEQVV TATPCIALKG IKSVESARDS VKVTIRERSP LHNFPPKRKL  60
ARQLVFTEFG LSPISISSPS LVNSSSEQHL SPQSPLSYKS ESPLPLHSTN MKANNGTPKY  120
PKQCGCKQSK CLKLYCECFA SGEYCNGCNC TECCNNVENE DLRKAVAEII LERNPHAFKP  180
KIASTPCSPQ NGDEATDAAP VGRNERGCHC KRSQCIKRYC ECFQANVLCS TNCKCMDCKN  240
FEACKDTMAA FGKNDSESEI CKKSEGCEGI IATSPRDNGI RKLFKSLKVS EGLNAVNHEN  300
SIDTKIHIQR NTAATSNATG SLGQCLSQES RKRKHLELNL DEKDSLIESF YGFQKVNNLK  360
NRCHSATISI EPTCHNINSA MMGSLRNPYR LMAADVYHLQ DTSDINSGLA VLAEAAALAQ  420
SAKLFTDKVD KADMKNEVER SYKNTLGDKE NNCQWGPVHV QRNVSDDLNV GFGANYGQEG  480
RTLPPGTFNI CNEKHEQFIK PASPNQILNC NINSVYAEQE KCVLTTFLDF LQKLVAFTNI  540
KDDASSYYGD KPVLIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	4e-47	CPP family protein

Link Out ? help Back to Top
Ensembl	OMO54070