PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO53969
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 436aa    MW: 49984.6 Da    PI: 6.0903
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO53969genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS288.81.5e-885643415374
      GRAS  15 gdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege.....e 110
               ++++ +++  ++l + +s  gd++qR++ayf+ +Laarl+   s  y+ +  ++t     +ee+ a++ ++ vsP+++f+h+taNqaIlea+e++     +
  OMO53969  56 NNNSSTSSSYEELYQSVSLMGDSVQRVVAYFADGLAARLLTRKSPFYDMIIKEPT----IEEEFLAFTCLYRVSPYYQFAHFTANQAILEAFERDqdinnR 152
               677778888899*****************************99999987766666....68999999**************************99555556 PP

      GRAS 111 rvHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrledleleeLrvkpgEalaVnlvl 208
               ++H+iDfd+s+G+QWp+L+q+L++++  ++  slR+Tg g+    + eel+et+ rL +fA+ + ++ fef+ l   r ++ +l +Lr k++E++aVnlv+
  OMO53969 153 ALHVIDFDVSYGFQWPSLIQSLSEKAtsGNRISLRLTGYGR----NLEELQETETRLMSFAKGFrNLVFEFQGL--LRGSNSKLINLRKKKNETVAVNLVF 247
               66**********************99755566*********....99***************9758*******8..778888999**************** PP

      GRAS 209 qlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre.. 307
               +l +l  + ++++    ++Lk + sl+P +v++veqe +++  sFl rf+e+l+y++a+fdsl+  lp es er ++E+  lg+ei+++v c ++e +e  
  OMO53969 248 HLNTLN-KLLKIS----DTLKSIHSLKPSIVILVEQEGSRSPRSFLSRFMESLHYFAAMFDSLDDCLPLESGERLSIEKNHLGKEIKSMVNCDNKEEEEed 343
               **9996.555555....5**************************************************************************887765534 PP

      GRAS 308 ...........rhetlekWrerleeaGFkpvplsekaakqaklllr........kv..k.sdgyrveee.sgslv.lgWkdrpLvsvSaWr 374
                          r e++e+W+ r+e+ GF+ ++l++k   qaklll+        ++  + s g+rv e+ +g ++ lgW+dr L+++SaW+
  OMO53969 344 ddeadqkkscpRYEKMETWKGRMESHGFEGMKLGSKCLIQAKLLLKirthycplQCegEqSGGFRVFERdDGKALsLGWQDRCLLTASAWQ 434
               44445555555789******************************97333322221211124458876544555556**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    
MFLRAEDTED QEDELLSLSL AIVTDHPGGE KNRKRKRSRL NIVSNTQKPL NDSNYNNNSS  60
TSSSYEELYQ SVSLMGDSVQ RVVAYFADGL AARLLTRKSP FYDMIIKEPT IEEEFLAFTC  120
LYRVSPYYQF AHFTANQAIL EAFERDQDIN NRALHVIDFD VSYGFQWPSL IQSLSEKATS  180
GNRISLRLTG YGRNLEELQE TETRLMSFAK GFRNLVFEFQ GLLRGSNSKL INLRKKKNET  240
VAVNLVFHLN TLNKLLKISD TLKSIHSLKP SIVILVEQEG SRSPRSFLSR FMESLHYFAA  300
MFDSLDDCLP LESGERLSIE KNHLGKEIKS MVNCDNKEEE EEDDDEADQK KSCPRYEKME  360
TWKGRMESHG FEGMKLGSKC LIQAKLLLKI RTHYCPLQCE GEQSGGFRVF ERDDGKALSL  420
GWQDRCLLTA SAWQCV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-54GRAS family protein