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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OMO53706 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 1169aa MW: 130247 Da PI: 9.5229 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 36.7 | 9.7e-12 | 47 | 82 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
WT+eE e++++a +++G++ Wk++a+t+ +R+ +++
OMO53706 47 QWTKEELERFYEAYRKHGKD-WKKVAATVR-NRSVEMV 82
6*****************99.*********.**98876 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 1169 aa Download sequence |
MAPSRKSKGV NKKFSYVSEV ASSKDGDSSA KKSGQRKRKL SDMLGPQWTK EELERFYEAY 60 RKHGKDWKKV AATVRNRSVE MVEALYSMNR AYLSLPEGTA SVVGLIAMMT DHYCVMGGSD 120 SEQESNEGMG SSRKPQKRSR GKLRDQPSKS LEKSFPDLLQ FHSATSTYGC MSLLKRRRSD 180 SRPRAVGKRT PRVPISFSHD KNKERYFSAF RQGMRPKTDT ADDDVAHEIA LALTEASQRG 240 GSPQVSRTPN RKAETPSPIL NGERMNADSE TISAKVHDSE MDEDDCELSL GSTEADNVDY 300 ARNKKYLINK KGTATVEVQQ RGKRHYRRKA GVEESVNNHL EDTKEACSGT EEGQKLCDFK 360 GELESDVADT KTSRASLKGP RKRSKKVLFG RVEDTSFDAL QTLADLSLMM PETAADTESS 420 VQFKEEKSEV VEKTKPKGNH PVPGAKGTAS KTSKQGKLFS HDVHAIPEAK EETSPSKVGI 480 RKRRQKSSPY KLQILKDEAD ADSHLGESQN IEASDGMKNL MSKGKRSSNV AHPKQGKSLR 540 TPERTSSSTD HGKDSNNPAP SSMQVASSNQ VNLPTRVRSK RKMDAVKPVT GKDTKSTDSI 600 VKGKSSVPVT LFHDRAHNLK EKLSNFLSSY QARRWCVFEW FYSTIDYPWF AKREFVEYLD 660 HVGLGHVPRL TRVEWGVLRS SLGKPRRFSE QFLKEEREKL HQYRESVRTH YAELRAGIGE 720 GLPTDLARPL SVGQRVIAVH PKTREIHDGS VLIVDRSRYR IQFDSPELGV EFVMDIDCMP 780 LNPLENLPVS LVRQHAAISK YVENYNEPKM NGQPKESKME ESMKFAQCEN LENAISPSRT 840 SPSTFNVGNL MPPVKIDSLS PNVQLKVGPL ETVYTQQAVN SQPSALALIQ AREADVEALS 900 RLTRALDKKE ALVSELRRMN DEVLENQKSG DNSIKDSDSF KKQYAAVLLQ LNEVSSALFC 960 LRQRNTYQGT SSVRLLKPMV GGHGCQLTSF DHSMHNLQES VSNVAEIVEG SRMKARSMVD 1020 AAMQAVSSLR KGVERIEDAI DVVNNQLSVD DLSLPAPRSS SIPIDSIRST VTLNDHPSAT 1080 SHSPDIKLQN LSDQDDPKIP SDLIAHCVAT LLMIQKCTER QFPPGEVAQV LDSAVTSLKP 1140 YCSQNLPIYA EIQKCMGIIR NQILALVPT |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 175 | 203 | KRRRSDSRPRAVGKRTPRVPISFSHDKNK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G21430.2 | 0.0 | MYB_related family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OMO53706 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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