PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO53705
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C3H
Protein Properties Length: 470aa    MW: 49305.2 Da    PI: 7.904
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO53705genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.54.1e-124468327
              S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
              ++ C +++rtG+C yG+rC+F+H++
  OMO53705 44 EADCIYYLRTGFCGYGSRCRFNHPR 68
              789********************96 PP

2zf-CCCH39.59.6e-1389113327
               S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
               ++ C++f+rtGtCk+G++Ck++H++
  OMO53705  89 QPVCQYFMRTGTCKFGASCKYHHPK 113
               689********************96 PP

3zf-CCCH35.12.2e-11134158226
               -S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
               ++++C+++ +tG+Ck+G++CkF+H+
  OMO53705 134 GEKECSYYVKTGQCKFGATCKFHHP 158
               7899********************8 PP

4zf-CCCH38.71.6e-12295321127
               --S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
               +++++C+++++tG Ck+G++C+++H+p
  OMO53705 295 PGQPECQYYMKTGDCKFGSSCRYHHPP 321
               5789*********************97 PP

5zf-CCCH33.19.8e-11343367327
               S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                ++C ++++ G Ck+G+ C+F H++
  OMO53705 343 APPCTHYSQRGVCKFGAACRFDHPM 367
               689********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    
MERGPESDPQ PEWTAPGPET GLEEPVWRLG LGGGPESYPE RPEEADCIYY LRTGFCGYGS  60
RCRFNHPRDR AAVNYPGAAA GEYPERVGQP VCQYFMRTGT CKFGASCKYH HPKQGGSSAS  120
PVPLNYYGYP LRPGEKECSY YVKTGQCKFG ATCKFHHPAP PAVQVLAPSP APQVAPVPAP  180
VPPPALYSTV QSPSGPSSQQ YGVVMARPPL MPGSYVQGPY GPLLLSPGMV SVPSWNPYQA  240
PGSPGTQPTV GSSSIFGVTP LSPSAPAYTG SYQPVPSGGV PSSSSQKEPS FPERPGQPEC  300
QYYMKTGDCK FGSSCRYHHP PEVIAPKADV ILSPLGLPLR PGAPPCTHYS QRGVCKFGAA  360
CRFDHPMGTL SYSPSASSLA DMPVAPYPVG STIGTLAPSS SSSELRPELI SGSSKETAPV  420
IMSSSVSSSS ESVGSVFSKG APVPHSSSQQ SSQNTASSTS SGSTEARPST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.11e-131C3H family protein