PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO53705

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C3H

Protein Properties

Length: 470aa MW: 49305.2 Da PI: 7.904

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO53705	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.5	4.1e-12	44	68	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yG+rC+F+H++ OMO53705 44 EADCIYYLRTGFCGYGSRCRFNHPR 68 789********************96 PP
2	zf-CCCH	39.5	9.6e-13	89	113	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f+rtGtCk+G++Ck++H++ OMO53705 89 QPVCQYFMRTGTCKFGASCKYHHPK 113 689********************96 PP
3	zf-CCCH	35.1	2.2e-11	134	158	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++ +tG+Ck+G++CkF+H+ OMO53705 134 GEKECSYYVKTGQCKFGATCKFHHP 158 7899********************8 PP
4	zf-CCCH	38.7	1.6e-12	295	321	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G++C+++H+p OMO53705 295 PGQPECQYYMKTGDCKFGSSCRYHHPP 321 5789*********************97 PP
5	zf-CCCH	33.1	9.8e-11	343	367	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C ++++ G Ck+G+ C+F H++ OMO53705 343 APPCTHYSQRGVCKFGAACRFDHPM 367 689********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MERGPESDPQ PEWTAPGPET GLEEPVWRLG LGGGPESYPE RPEEADCIYY LRTGFCGYGS 60 RCRFNHPRDR AAVNYPGAAA GEYPERVGQP VCQYFMRTGT CKFGASCKYH HPKQGGSSAS 120 PVPLNYYGYP LRPGEKECSY YVKTGQCKFG ATCKFHHPAP PAVQVLAPSP APQVAPVPAP 180 VPPPALYSTV QSPSGPSSQQ YGVVMARPPL MPGSYVQGPY GPLLLSPGMV SVPSWNPYQA 240 PGSPGTQPTV GSSSIFGVTP LSPSAPAYTG SYQPVPSGGV PSSSSQKEPS FPERPGQPEC 300 QYYMKTGDCK FGSSCRYHHP PEVIAPKADV ILSPLGLPLR PGAPPCTHYS QRGVCKFGAA 360 CRFDHPMGTL SYSPSASSLA DMPVAPYPVG STIGTLAPSS SSSELRPELI SGSSKETAPV 420 IMSSSVSSSS ESVGSVFSKG APVPHSSSQQ SSQNTASSTS SGSTEARPST

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MERGPESDPQ PEWTAPGPET GLEEPVWRLG LGGGPESYPE RPEEADCIYY LRTGFCGYGS  60
RCRFNHPRDR AAVNYPGAAA GEYPERVGQP VCQYFMRTGT CKFGASCKYH HPKQGGSSAS  120
PVPLNYYGYP LRPGEKECSY YVKTGQCKFG ATCKFHHPAP PAVQVLAPSP APQVAPVPAP  180
VPPPALYSTV QSPSGPSSQQ YGVVMARPPL MPGSYVQGPY GPLLLSPGMV SVPSWNPYQA  240
PGSPGTQPTV GSSSIFGVTP LSPSAPAYTG SYQPVPSGGV PSSSSQKEPS FPERPGQPEC  300
QYYMKTGDCK FGSSCRYHHP PEVIAPKADV ILSPLGLPLR PGAPPCTHYS QRGVCKFGAA  360
CRFDHPMGTL SYSPSASSLA DMPVAPYPVG STIGTLAPSS SSSELRPELI SGSSKETAPV  420
IMSSSVSSSS ESVGSVFSKG APVPHSSSQQ SSQNTASSTS SGSTEARPST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-131	C3H family protein

Link Out ? help Back to Top
Ensembl	OMO53705