PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO53704
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 344aa    MW: 38324.9 Da    PI: 5.9929
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO53704genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-175199355
       AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
              + GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  OMO53704 51 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 99
              56******.**********965...5************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    
MDMSTSKTLD KPFGYEAVQT QAGFALLQRN TSPSQSGERR GRRKQAEPGR FLGVRRRPWG  60
RYAAEIRDPT TKERHWLGTF DTAQEAALAY DRAALSMKGT QARTNFIYSD NSTFHSLLTP  120
FDVQAILPTS HQQFFTSSTS QPKQQATTNN IHHSNNAIIT TTHSDISHSK IQIPIPTQSN  180
NNNNNSNNQS SSADETPYGS VDDCSSFFFT SDNNHTDSNS GYLACIVPDN CLKPPSTTSS  240
SSNQKSTSHC ALPPDHHMEF PGFDEVLNQG FWSTEEQHHH QSWEMINSNE LSAMINPPLM  300
VDQEDCMGAF YPYNDNYSTM INPSQATSSL PPFGDVVNLG YSLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.11e-60ERF family protein