PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO53695
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family LBD
Protein Properties Length: 282aa    MW: 31847.7 Da    PI: 9.2601
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO53695genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260105.83.5e-3322117195
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
               aCaaCk++r+kC ++C+l+pyfpa+++++f++vhk+FG+sn +k+++++ ++e+r+++++sl++eA +r++dPv G +g ++k+ ++l   k++ +
  OMO53695  22 ACAACKHQRKKCDENCILSPYFPADKSREFQAVHKVFGVSNATKIIRNAnSDEDRKKVADSLIWEAFCRQKDPVLGPYGEYRKIYEELTLYKSQNQ 117
               7**********************************************9945566*******************************99998887765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MQRNNNNGSI ATAAAGGGVH PACAACKHQR KKCDENCILS PYFPADKSRE FQAVHKVFGV  60
SNATKIIRNA NSDEDRKKVA DSLIWEAFCR QKDPVLGPYG EYRKIYEELT LYKSQNQMML  120
LQVHQGRDDQ SAATHVLKMA PNNVIEWNNN NHNQNNSNNT TNNGLTNNNN INSKTLIDVK  180
GGATINNVVL RYNNHQGVVN VGHEESLVDF SSYGYPSHSQ KSVQDKPTSI LPLQYYASGN  240
YYKLINHLIL LIIYIYNLII KKYSFYSSFY SHGRSYGLLL YS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.14e-46LBD family protein