PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO53591
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ARR-B
Protein Properties Length: 661aa    MW: 72209 Da    PI: 5.9304
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO53591genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.47.9e-29204257155
   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
               kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  OMO53591 204 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 257
               79*******************.********************************8 PP
2Myb_DNA-binding42.61.4e-13206256148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W+ e+++++v av+qlG +   +k+I + m+  g+t++++ s++qky+
         OMO53591 206 RVVWSVELHQQFVAAVNQLGIDkaVPKKILELMNvPGLTRENVASHLQKYR 256
                      678***********************************************7 PP
3Response_reg76.21.2e-25261341109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l+   y ev+ +  +e al +l+e++  +D+++ D+ mp+mdG++ll++i  e  +lp+i+++a + ++ + + +  Ga 
      OMO53591  26 VLVVDDDPTCLMILEKMLRTCLY-EVTKCNRAETALSMLRENKngFDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDGKSVVMKGVTHGAC 120
                   89*********************.***************999999**********************6654.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +e+l +
      OMO53591 121 DYLIKPVRIEALKN 134
                   **********9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    
MSTASSSAAW KTGDVVPDQF PAGLRVLVVD DDPTCLMILE KMLRTCLYEV TKCNRAETAL  60
SMLRENKNGF DIVISDVHMP DMDGFKLLEH IGLEMDLPVI MMSADDGKSV VMKGVTHGAC  120
DYLIKPVRIE ALKNIWQHVV RKRKNEWKDF EQSGSVEEGD RQPKQSEDAD YSSSANEGNW  180
KSSKKRKDDE DDADERDDTS TLKKPRVVWS VELHQQFVAA VNQLGIDKAV PKKILELMNV  240
PGLTRENVAS HLQKYRLYLR RLSGVSQHPG NLNNSFISSQ DATFGPLSTL NGLDLQTLAA  300
TGQLPAQSLA TLQAAGLGRS SAKSGLPMPL VDQRNIFSFE NPKLRFGEGQ QQHMSNNKQI  360
NLLHGIPTTM EPKQLASLHH TAQSIGNINM QVASHSAQGS QNNSLLIQMA QPQSRGQLLS  420
GDSVGSHAPR LPSNMGQPIL SNGIAATRNG IPEIRGSGYN PISQASSMLN FPINQTSELP  480
GNGFPIGSAG ISSLTSKGTF QEGSAGFMPS YDIFNDLNQH KPQNWELQNV GMPFDASQHS  540
SSVQSNLDIP QSVLVQQGFS ASQVNGQNRG VGVVSKAMFS TVDSTEQGNG QNVNHHLNNL  600
LVDNTVRVKS ERIVDAGPAN LYPDHFGQED LMSALLKQQE GIVPTENEFD FDGYSMDNIP  660
V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.10.0ARR-B family protein