PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO53573

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

CAMTA

Protein Properties

Length: 909aa MW: 102678 Da PI: 8.0672

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO53573	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	163.1	5e-51	29	146	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 ++e k+rwl+++ei+a+L n++ + + ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+++ ptf rrcywl OMO53573 29 MEEaKSRWLRPNEIHAVLCNHKYFPINVKPVNLPKSGTVVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDIPTFVRRCYWL 129 55669********************************************************************************************** PP CG-1 102 Leeelekivlvhylevk 118 L+++le+ivlvhy+e++ OMO53573 130 LDKTLEHIVLVHYRETQ 146 ************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 909 aa Download sequence
MDGGRSGRLV GAEIHGFHTL EDLDVPTMME EAKSRWLRPN EIHAVLCNHK YFPINVKPVN 60 LPKSGTVVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGQDIP 120 TFVRRCYWLL DKTLEHIVLV HYRETQELQG SPATPVNSNS STISDQSTPL LVTDEFDSAA 180 GNAFYEGPGD STVRNHEMRL HEINTLDWDE LLVTNEINDS NVSRRDKNSC FDQRSEVAVN 240 GFSNNGGPIS AYNLSTEISS LGNLTEQVAQ SNNAYINYPD GVCNQISGGQ VYSIAQRRDS 300 SAIGTGNPVD LLANDGLQSQ DSFGKWVNYI MTESPGSVDD PVIESSISSG QDSFTSPEQI 360 FSITAVSPAW AYSTEKTKIL VTGFFNPAYQ HLVKSNLFCV CGDVCVPAEI VQVGVYRCLL 420 SLNSPGLVNL YMSLDGHKPI SQVLGFEYRA PVLHDSMLPP EESRWEDFQL QMRLAYLLFS 480 TSKSLNILSS KVSPNALKEA KKFAMKTTNI SNSWAYLMKS IEENRASFSQ AKDSLFEIAL 540 KNRLKDWLLE RILEGCKSTE YDAQGLGVLH LCAILDYTWA IYLFSWSGLS LDFRDKHGWT 600 ALHWAAYYGR EKMVAVLLSA GAKPNLVTDP TTQNPSGCTA ADLASSKGYD GLAAYLSEES 660 LVAQFNDMSV AGNASGSLQT SRIETTNLDN LNEDEVYLKD TLAAYRTAAD AAARIQTAFR 720 EHSLKIRTQA VQSFSPEDEA RHIVAALKIQ HAYRNYETKK KMAAAARIQY RFRTWKMRKD 780 FLNMRRQAVK IQAAFRAFQV RRQYRKILWS VGILEKAVLR WRLKRKGFRG LQVSAVDVTA 840 EQRQDSETEE DFYRTSRKQA EERVENAVVR VQSMFRSKKA QQEYRRMKLA HELAKLEYES 900 LLNPPYMKA

Sequence ? help Back to Top

Protein Sequence Length: 909 aa Download sequence

MDGGRSGRLV GAEIHGFHTL EDLDVPTMME EAKSRWLRPN EIHAVLCNHK YFPINVKPVN  60
LPKSGTVVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGQDIP  120
TFVRRCYWLL DKTLEHIVLV HYRETQELQG SPATPVNSNS STISDQSTPL LVTDEFDSAA  180
GNAFYEGPGD STVRNHEMRL HEINTLDWDE LLVTNEINDS NVSRRDKNSC FDQRSEVAVN  240
GFSNNGGPIS AYNLSTEISS LGNLTEQVAQ SNNAYINYPD GVCNQISGGQ VYSIAQRRDS  300
SAIGTGNPVD LLANDGLQSQ DSFGKWVNYI MTESPGSVDD PVIESSISSG QDSFTSPEQI  360
FSITAVSPAW AYSTEKTKIL VTGFFNPAYQ HLVKSNLFCV CGDVCVPAEI VQVGVYRCLL  420
SLNSPGLVNL YMSLDGHKPI SQVLGFEYRA PVLHDSMLPP EESRWEDFQL QMRLAYLLFS  480
TSKSLNILSS KVSPNALKEA KKFAMKTTNI SNSWAYLMKS IEENRASFSQ AKDSLFEIAL  540
KNRLKDWLLE RILEGCKSTE YDAQGLGVLH LCAILDYTWA IYLFSWSGLS LDFRDKHGWT  600
ALHWAAYYGR EKMVAVLLSA GAKPNLVTDP TTQNPSGCTA ADLASSKGYD GLAAYLSEES  660
LVAQFNDMSV AGNASGSLQT SRIETTNLDN LNEDEVYLKD TLAAYRTAAD AAARIQTAFR  720
EHSLKIRTQA VQSFSPEDEA RHIVAALKIQ HAYRNYETKK KMAAAARIQY RFRTWKMRKD  780
FLNMRRQAVK IQAAFRAFQV RRQYRKILWS VGILEKAVLR WRLKRKGFRG LQVSAVDVTA  840
EQRQDSETEE DFYRTSRKQA EERVENAVVR VQSMFRSKKA QQEYRRMKLA HELAKLEYES  900
LLNPPYMKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	CAMTA family protein

Link Out ? help Back to Top
Ensembl	OMO53573