PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO53538
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 594aa    MW: 67441 Da    PI: 4.7686
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO53538genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS293.65.3e-902245924374
      GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl....fsevsPilkfshltaN 99 
               lLl++Ae v +++  +a +lL++   ++s++g+p+qR++ y+ eAL++++ +++ + +++  ++++    n +e++++ +      +e  P+ +++++t  
  OMO53538 224 LLLAAAEKVGQQQYDRAVRLLKQCDFMSSKTGNPVQRVVYYLSEALREKIDKETGRSSSKGsNSKPLF--NIDEAMMSPNPttvaCYEEMPFARITQFTGI 322
               89**************************************************4444443331333333..33333333322345689999*********** PP

      GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
               qaI+e v +++++Hi D++i +G+QW  L+q+La+R  ++   l+iT+v+    + k+  eetg+rL++fA++l++pf f+v++++++ dl+ ++++++ +
  OMO53538 323 QAIVENVGEAKKIHIFDLEIRNGMQWTVLMQSLACRYaSPLELLKITAVAT---TAKHLREETGKRLSSFADSLNLPFAFKVVMVSDMLDLKEDMFELDAE 420
               ************************************9455569********...45777789*************************************** PP

      GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
               E++aV  +++   +l    s+++++++v+k+++ ++P ++vv+e ea+hns+ F++rf+e l ++s+ fd+l++ + ++ ++r  +E +++ + i+n++a+
  OMO53538 421 ETVAVYASFAFRMML----SMPNRIENVMKVIRLINPCIMVVTEVEANHNSPIFVNRFIEVLFFFSSYFDCLASCMKQDCKNREIIESVFFFEGIRNILAA 517
               *********999998....66666677************************************************************************** PP

      GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
               eg+er+ rh ++  Wr+ + + G+++++ls +a+ qa+l+l+k++ ++ y+++ + ++l+ gWk+ p+ s+S+W+
  OMO53538 518 EGEERKIRHVNFDVWRQFFARYGMEEAELSMSAMYQADLILKKFAdGNCYTLQMNGKCLLVGWKGTPMHSISVWK 592
               *********************************************8888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    
MANVVFSFDE LNVVGVQDKL SSSNKDFQSF DVSTEGKQSS FYGAEDWGET GGIDSLSSDY  60
GFYRDDEGFT FSKYRPQEQP FTDYGLLDGV TFDASSPPIQ TCFEEIAKIG QNIPSGNVLE  120
VSKKETLNQY PFSISSLGLL NNYGSGFKRL NGERRIEAVN EIKLVTKTKE EEEERKVLST  180
EEIMRVAGEM FIQSFSCQTF EHPFNLSFSG ISEQEKKDVE LAVLLLAAAE KVGQQQYDRA  240
VRLLKQCDFM SSKTGNPVQR VVYYLSEALR EKIDKETGRS SSKGSNSKPL FNIDEAMMSP  300
NPTTVACYEE MPFARITQFT GIQAIVENVG EAKKIHIFDL EIRNGMQWTV LMQSLACRYA  360
SPLELLKITA VATTAKHLRE ETGKRLSSFA DSLNLPFAFK VVMVSDMLDL KEDMFELDAE  420
ETVAVYASFA FRMMLSMPNR IENVMKVIRL INPCIMVVTE VEANHNSPIF VNRFIEVLFF  480
FSSYFDCLAS CMKQDCKNRE IIESVFFFEG IRNILAAEGE ERKIRHVNFD VWRQFFARYG  540
MEEAELSMSA MYQADLILKK FADGNCYTLQ MNGKCLLVGW KGTPMHSISV WKFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-56GRAS family protein