PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO53537 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | GRAS | ||||||||
Protein Properties | Length: 232aa MW: 25224.9 Da PI: 8.4101 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 97.8 | 1.6e-30 | 58 | 222 | 4 | 163 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.sseelaalkl..fsevs...Pilkfshlt 97 lLl+ A+ vss++ a+++L+ l+s++g+++qR+++yf +AL+a++ + ++++++ +++ + +n + +e+ + + + ++ P++++++++ OMO53537 58 LLLASADKVSSRQYDHARKFLNLCDFLSSNAGTSIQRVVHYFSKALRAKIDGePGETTSNGRESRVGQVSNgHPDETIVSQSpaLISCTlklPFIQVTQFA 158 899************************************************96667777666666555555644444444444655543444********* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetge 163 qaI e v++++r+HiiD+ i G+Q ++L+qaLa+R+e p l+iT+vg +sk+++e+tg+ OMO53537 159 GLQAITEHVASAKRIHIIDLAIRSGAQCISLMQALATREECPVeLLKITAVGT---TSKKKIEQTGD 222 ***************************************7665499*******...57888888887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence |
MASAHEASAV RLIKIAKASF NKVASLEWFD LSVLNKFFDC SSFSLSGDEI KDVELALLLL 60 ASADKVSSRQ YDHARKFLNL CDFLSSNAGT SIQRVVHYFS KALRAKIDGE PGETTSNGRE 120 SRVGQVSNGH PDETIVSQSP ALISCTLKLP FIQVTQFAGL QAITEHVASA KRIHIIDLAI 180 RSGAQCISLM QALATREECP VELLKITAVG TTSKKKIEQT GDQKHCCCRG RG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46600.2 | 4e-12 | GRAS family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO53537 |