PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO53517 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | C3H | ||||||||
Protein Properties | Length: 112aa MW: 12748.7 Da PI: 8.9346 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.7 | 1.1e-09 | 28 | 54 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +ktelC + + +G C +G rCkFaHg+ OMO53517 28 PKTELCTNCQTSGRCAFGKRCKFAHGR 54 7************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence |
MPLYISKPVD ASVEMEDLMT VAYTQGTPKT ELCTNCQTSG RCAFGKRCKF AHGRERLRLV 60 IHNNRYKSRL GISYDILSEI VDIGEIYQLS ILSFSSPFAG LQHRFNPNKM GW |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 1e-11 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO53517 |