PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO53484
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family WRKY
Protein Properties Length: 365aa    MW: 40026.5 Da    PI: 6.3179
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO53484genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.13.6e-33200258159
               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
               ldDgy+WrKYGqK vk+s++prsYYrCtsagC vkk+vers++d ++v++tYeg+H+h+
  OMO53484 200 LDDGYRWRKYGQKAVKNSPYPRSYYRCTSAGCGVKKRVERSSDDSTIVVTTYEGQHTHP 258
               59********************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    
MEKKKEEEKK EINSMANLRF SDENPTAASS FGGGSIFDMA AGACDVSGGD KWGSLGFMDL  60
LGIHQDFSAP SLFDSFHHPP ILSPPPPPPL PPLSSASELL PSENIDTKQV LLQQTSLPSP  120
ASTVPESSEV LNNPATPNSS SISSSSNEAA NDDQTKLAGD DEEQDQDKSK KLQLKPKKKN  180
PKRQREPRFA FMTKSEVDHL DDGYRWRKYG QKAVKNSPYP RSYYRCTSAG CGVKKRVERS  240
SDDSTIVVTT YEGQHTHPCP ITPRGTIGIA HDPSSFGAPS FVVPQPQYLH QQQQPYIYTS  300
SPSMNITTTT TTTSTSTTSS SFINSSFPAF LQERRFMTTP SAASLLRDDG LLQDIVPSQM  360
RKLED
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.15e-47WRKY family protein