PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO52888
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 182aa    MW: 20589.1 Da    PI: 6.5941
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO52888genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.2e-19755254
       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
              +y+GVr+++ +g+Wv+eIr+p+    ++r++lg+f tae+Aa+a+++a++ + 
  OMO52888  7 RYRGVRQRH-WGSWVSEIRHPVL---KTRIWLGTFETAEDAARAYDEAARLMC 55
              69******9.**********744...5**********************8775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    
MGRPQQRYRG VRQRHWGSWV SEIRHPVLKT RIWLGTFETA EDAARAYDEA ARLMCGQKAR  60
TNFPYNPNEP QSSSSKLLSA TLAAKLHKCH MAALQLAKKN AAKESYGTQC HDLAPNCDIA  120
GNHNVEMGCR RLPEIKWEEG EESHHGGSEQ QQFIPLEDDH IDQMIEELLD YGSIELCSVS  180
SN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.14e-48ERF family protein