PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO52507
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family FAR1
Protein Properties Length: 795aa    MW: 91650 Da    PI: 8.5727
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO52507genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.79.7e-2499191190
      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
               +fY++YA+ +GFs rk +s+  k+++e+++++f C++ g r  +  k  t+k+r++++ +r++C a+++v++++ +g w+vt ++  HnH+la
  OMO52507  99 DFYRAYAHVIGFSARKGSSRVDKDSREVVMKEFSCNRAGARLAKWMKrcTDKRRQPKPLSRCNCPAHMRVTLDQnSGLWQVTLFKDGHNHKLA 191
               6****************************************9988777899**********************99****************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    
MEEAEVNAMS PIELNSDNSN EVEFESVETE RSIEGGEAGT SVGGSENGLD RSDVDVYETT  60
PEWEDVIRLN GFLIGKDPKK LSREDFENLQ FKSIDEAYDF YRAYAHVIGF SARKGSSRVD  120
KDSREVVMKE FSCNRAGARL AKWMKRCTDK RRQPKPLSRC NCPAHMRVTL DQNSGLWQVT  180
LFKDGHNHKL AKESQKFMVR SNREVCSGAA EFARALKKGG SRPCEIMNYL AQEAGGYQNV  240
GFTKKDLCNK LYRDSRNNVK ELGDVKSALC YLEKRASVEP GFYVQYQKNN DGESEVFRRA  300
FWADSRSRAD YHIFGDVIAF SATYKKNRRD VALLVFVGCN NHHQTIVYGF GLLEKETKED  360
YVWVLQQFLR CMSDKRPISI VTDGAQAMAN ALKVVMLEAN HRLCVWHIHR NAKRHLPTAD  420
AIDKFKRCML AWWKADDFER GWKELVEMNG MRNNSWVVQM YRIKEYWAQA FITGKFFAGM  480
KTTSRCEGYN SYLKRFIRRE GTMVEFMQSI ENAALEDYAG HVFTRRSFGR FRKELRREAT  540
YYSASAPAVM STRIKVYRIL KYLEPNNERE VSYDPENGSI KCDCMLLETD GIPCRHAIHV  600
MKVENLRSIP KRCIKKRWTK NAKDLSDEEE AFASVDEKAI EALRRSSLQM MLSTICYMGS  660
KSKKAFLEAR EKISRLIESM GVESKNAKRE DAPSTEDGPE GLTQEQAEPE GHPDQKKRRE  720
YKCSFCRKVG HKKPSCPMLE IRTAQPVELG MMRSSDSDSE YNTSDDELCR NGRSWADCRD  780
YMDEEAVLFR SPKKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-84FAR1 family protein