PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO52282

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

TALE

Protein Properties

Length: 340aa MW: 38043.8 Da PI: 5.156

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO52282	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23	1.4e-07	257	289	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp++e++++L +++gL+ +q+ +WF N+R + OMO52282 257 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 289 59*****************************87 PP
2	ELK	29.2	2.1e-10	210	231	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ OMO52282 210 ELKHELKQGYKEKIVDIREEIL 231 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MAFDGFLSDH AKDMHTLALN EPGASASAAA AAAAAVAADV DNWEKAKCKA EIMAHPMYDQ 60 LLEAHVACLR VATPVDQLAK IDAQLARSQE VMTKYSAAAA AAAAEEELDH FMTNYVLLLG 120 FFKDQLQQHV RVHAMEAVMA CWDLEQSLQS LTGVSPGEGT GATMSDDEDE VVDSDTSLFD 180 GSFDGIDSMG FGPLVPTETE RSLMERVRQE LKHELKQGYK EKIVDIREEI LRKRRAGKLP 240 GDTTSLLKAW WQSHSKWPYP TEEDKARLVQ ETGLQLKQIN NWFINQRKRN WHSNPSTSLK 300 SKRKRGMVLT YIPYEQLMEE FHGTNGFNHD KNSNTSDLDL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	287	305	RKRNWHSNPSTSLKSKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11060.1	1e-149	TALE family protein

Link Out ? help Back to Top
Ensembl	OMO52282