PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMO51664 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 326aa MW: 36818.5 Da PI: 4.3188 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.4 | 5.6e-19 | 87 | 141 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++t++q++ Le+ Fe ++++ e++ +LAk+lgL+ rqV +WFqNrRa++k+ OMO51664 87 KKRRLTATQVQFLERSFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARYKN 141 45689************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 129.2 | 1.7e-41 | 87 | 178 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrl++ qv++LE+sFe e+kLeperKv+la+eLglqprqva+WFqnrRAR+k+kqlEkdy++Lk++yd+lk++ ++L ke+++L++e+++ OMO51664 87 KKRRLTATQVQFLERSFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARYKNKQLEKDYDSLKASYDKLKADYDNLLKEKDNLKNEVSA 178 9**************************************************************************************99875 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 326 aa Download sequence |
MKGGEICGSS NMNVLLQSKP LSCSSEVMES LWIPSTTSSS LQDHPKPIIS YKNVNGVDTT 60 ELPFFQPFDK AENGDDDFDG SFQPAGKKRR LTATQVQFLE RSFEVENKLE PERKVQLAKE 120 LGLQPRQVAI WFQNRRARYK NKQLEKDYDS LKASYDKLKA DYDNLLKEKD NLKNEVSALK 180 EKLLEREEGI ENLESLDHAI NSSNAESEKL DDSAGLSPEN VSHVPLPVCK QEEAASSAKS 240 DIFDSDSPHY TDGNYSSLIE PADSSNVFEP DQSEFSQDEE DNLSNSLLHP PFFPKFEVDD 300 CYYEAHPSSC NFALPVEDQS FWSSLY |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 135 | 143 | RRARYKNKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G01470.1 | 2e-43 | HD-ZIP family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OMO51664 |