PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO51030
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family FAR1
Protein Properties Length: 270aa    MW: 31082.1 Da    PI: 5.3843
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO51030genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR135.43.6e-11641015390
      FAR1  53 rtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                ++  ++ gCka+l+++k++++kw++++++  HnHela
  OMO51030  64 AQEYYNKEGCKAMLRISKKEEQKWVISRFHAAHNHELA 101
               56677899****************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MENTSKQNVN SEEIVEFEDD EVNTMEEKEV PEGEDATDHV IEDSIIEALQ EPYVGMEFES  60
PDDAQEYYNK EGCKAMLRIS KKEEQKWVIS RFHAAHNHEL AMPKSTPLIR SHRKRSRVQK  120
DLMDVLADSG IRPSKIVSVL SHESGGLNNL NMTDRDVFNY LSLKRQKQIE KGDAQVMLDY  180
FHDCQSKNPG FFYSIQTDVD GRLANCFWVD ARSRMAYKHF GDVIAFDPTY LTNKYRMSFV  240
PFAGVNHHFQ SVLFGCALLQ SHVMILKMLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-55FAR1 family protein