PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO50924

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

GRF

Protein Properties

Length: 630aa MW: 68467.7 Da PI: 8.6412

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO50924	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.9	2e-24	229	273	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e+ OMO50924 229 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVES 273 79****************************************986 PP
2	QLQ	62.6	1.1e-21	159	195	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+P++Ll +i+k OMO50924 159 GPFTPSQWMELEHQALIYKYITANVPIPSNLLIPIRK 195 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 630 aa Download sequence
MDFGVVSLEG FVGSDNTTTT TTSTGFASDP ETKQKWYGSG SNFLKQERSG NNEDDWRGSK 60 LAKIDDFSAS KAMQLLQQRN TLLRSNNTNS TSSSSIFSSD GHQQMLSFST PKSDALSLDR 120 SSQNVSFPYF HLTSPAYSRN TGYNTGGFNG AGMHGVLRGP FTPSQWMELE HQALIYKYIT 180 ANVPIPSNLL IPIRKALDSA DFSTFSGGLL RPNALGWGTF HLGFSNNTDP EPGRCRRTDG 240 KKWRCSRDAV ADQKYCERHM NRGRHRSRKP VESQSGHSAA ATTTATTTKL MPTVSSSASV 300 VVGTAGGGSG ESNSLTIAQQ QFKNLQPGSA SNLSAAPPLN RLLLNKDNVD VISPTGDLKS 360 KENPFLIPKQ QQISYEQNSR NEFGVVSSDS LLNPSHKNSS LIKCRNFGSS QDEETESQRS 420 FRQFMDDWPK TQSDRSSISW PDVQSSDRTQ LSISIPMAAS DFMSSTSSPN NDKVTLSPLR 480 LSREFDPIHM GLGVGSVINE SNQRQANWIP ISWETSMGGP LGEVLHTTNT SSTADCKNSS 540 ALNLMTEGWD NSPSLGSSPT GVLQKTTFGS LSNSSAGSSP RAENNKGHET ASLCNDLLGS 600 TLVHTSSLPA LGLLCPYQQV PRFWNKKQKN

Sequence ? help Back to Top

Protein Sequence Length: 630 aa Download sequence

MDFGVVSLEG FVGSDNTTTT TTSTGFASDP ETKQKWYGSG SNFLKQERSG NNEDDWRGSK  60
LAKIDDFSAS KAMQLLQQRN TLLRSNNTNS TSSSSIFSSD GHQQMLSFST PKSDALSLDR  120
SSQNVSFPYF HLTSPAYSRN TGYNTGGFNG AGMHGVLRGP FTPSQWMELE HQALIYKYIT  180
ANVPIPSNLL IPIRKALDSA DFSTFSGGLL RPNALGWGTF HLGFSNNTDP EPGRCRRTDG  240
KKWRCSRDAV ADQKYCERHM NRGRHRSRKP VESQSGHSAA ATTTATTTKL MPTVSSSASV  300
VVGTAGGGSG ESNSLTIAQQ QFKNLQPGSA SNLSAAPPLN RLLLNKDNVD VISPTGDLKS  360
KENPFLIPKQ QQISYEQNSR NEFGVVSSDS LLNPSHKNSS LIKCRNFGSS QDEETESQRS  420
FRQFMDDWPK TQSDRSSISW PDVQSSDRTQ LSISIPMAAS DFMSSTSSPN NDKVTLSPLR  480
LSREFDPIHM GLGVGSVINE SNQRQANWIP ISWETSMGGP LGEVLHTTNT SSTADCKNSS  540
ALNLMTEGWD NSPSLGSSPT GVLQKTTFGS LSNSSAGSSP RAENNKGHET ASLCNDLLGS  600
TLVHTSSLPA LGLLCPYQQV PRFWNKKQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-105	GRF family protein

Link Out ? help Back to Top
Ensembl	OMO50924