PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO50919

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 519aa MW: 58461.1 Da PI: 6.666

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO50919	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.7	4.4e-24	123	215	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY++Y++ +GFsvr+ +s+ k+++ +++++f C+k g r + k +ek r++++ +r++C a+++v++++ +g w+vt ++ +HnH+la OMO50919 123 EFYKAYGHIMGFSVRRGSSRVDKESRAVVMKEFSCNKAGARMVKWMKrcSEKMRQPKPISRCKCPAHMRVTLDQiSGIWHVTLFNAKHNHPLA 215 6**************************************998777778999************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence
MESDEGIGSM AMDSQSHGSH EFAVEAIETD RSILAADKIF QLDQENTATE AEEGNGSRGA 60 RVSQGGYEQD MDFEILESDE NEINGEWEDV IGLNDFLIGK DPKKISTGDM ERLQFSSSNE 120 AFEFYKAYGH IMGFSVRRGS SRVDKESRAV VMKEFSCNKA GARMVKWMKR CSEKMRQPKP 180 ISRCKCPAHM RVTLDQISGI WHVTLFNAKH NHPLAKPSRR FMMYKIKELW AQALITGKFF 240 AGMKTTSRSE GAPTVMVSGN RVYNLKKYMR PDNVTEVCYD PDEGRIKCEC KLFGTDGIPC 300 RHAIHVMKIE NLSRIPKSII KKRWSKNAKD FTAEEEVFGV VDEKAIEALR RSSLQMMCST 360 ICYMRSKSKR AFLEARDKIA RLIQTMAADP KEATGEAGLD TEVGPDTKVA PEEGLTQEQA 420 AVDPERRKKR DYKCGFCRKV RHKKTCCPLL QPRNNEVAVE FPLVSSAGSD SEYNTSDDEL 480 CRGRRSWAGS CNARDEDAVD GESDSLDNED ETVVGLQRT

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence

MESDEGIGSM AMDSQSHGSH EFAVEAIETD RSILAADKIF QLDQENTATE AEEGNGSRGA  60
RVSQGGYEQD MDFEILESDE NEINGEWEDV IGLNDFLIGK DPKKISTGDM ERLQFSSSNE  120
AFEFYKAYGH IMGFSVRRGS SRVDKESRAV VMKEFSCNKA GARMVKWMKR CSEKMRQPKP  180
ISRCKCPAHM RVTLDQISGI WHVTLFNAKH NHPLAKPSRR FMMYKIKELW AQALITGKFF  240
AGMKTTSRSE GAPTVMVSGN RVYNLKKYMR PDNVTEVCYD PDEGRIKCEC KLFGTDGIPC  300
RHAIHVMKIE NLSRIPKSII KKRWSKNAKD FTAEEEVFGV VDEKAIEALR RSSLQMMCST  360
ICYMRSKSKR AFLEARDKIA RLIQTMAADP KEATGEAGLD TEVGPDTKVA PEEGLTQEQA  420
AVDPERRKKR DYKCGFCRKV RHKKTCCPLL QPRNNEVAVE FPLVSSAGSD SEYNTSDDEL  480
CRGRRSWAGS CNARDEDAVD GESDSLDNED ETVVGLQRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	5e-11	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMO50919