PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO50885

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

TALE

Protein Properties

Length: 368aa MW: 42049.9 Da PI: 6.3296

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO50885	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.4e-09	295	330	20	55
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ LA+++gL+++q+ +WF N+R ++ OMO50885 295 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 330 4679*****************************885 PP
2	ELK	37.9	3.8e-13	250	271	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrKYsgyL+sLkqE+s OMO50885 250 ELKNHLLRKYSGYLSSLKQELS 271 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MEEYNQLNEN STPRGNFLYA TSVLAPNSSS SPYGRASSGS NVSTQMPLTS FHLQSSDCYQ 60 SETHPIVKTE ATTSQHAQKF HYPLLRGHQS IHHQQEGNES SGSEVEAIKA KIIAHPQYSN 120 LLEAYMDCQK VGAPPEVVAR LAAARQEFEA RQRSSVTSRD NSKDPELDQF MEAYYDMLVK 180 YREELTRPIQ EALDFMRRIE AQLNMLSNGP VRIFNSDEKC EGVGSSEEDQ DNSGGEAEPP 240 EIDPRAEDRE LKNHLLRKYS GYLSSLKQEL SKKKKKGKLP KEARQKLLSW WELHYKWPYP 300 SETEKVALAE STGLDQKQIN NWFINQRKRH WKPSEDMQFM VMDGLHPQNA ALYMDGHYMG 360 DGPYRLGP

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MEEYNQLNEN STPRGNFLYA TSVLAPNSSS SPYGRASSGS NVSTQMPLTS FHLQSSDCYQ  60
SETHPIVKTE ATTSQHAQKF HYPLLRGHQS IHHQQEGNES SGSEVEAIKA KIIAHPQYSN  120
LLEAYMDCQK VGAPPEVVAR LAAARQEFEA RQRSSVTSRD NSKDPELDQF MEAYYDMLVK  180
YREELTRPIQ EALDFMRRIE AQLNMLSNGP VRIFNSDEKC EGVGSSEEDQ DNSGGEAEPP  240
EIDPRAEDRE LKNHLLRKYS GYLSSLKQEL SKKKKKGKLP KEARQKLLSW WELHYKWPYP  300
SETEKVALAE STGLDQKQIN NWFINQRKRH WKPSEDMQFM VMDGLHPQNA ALYMDGHYMG  360
DGPYRLGP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08150.1	1e-137	TALE family protein

Link Out ? help Back to Top
Ensembl	OMO50885