PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO50807
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GATA
Protein Properties Length: 273aa    MW: 29646.6 Da    PI: 5.1628
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO50807genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.51e-14181217135
      GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
               C++Cg ++  Tp++Rrgp+g+++LCnaCGl ++ kg+
  OMO50807 181 CTHCGISSkcTPMMRRGPSGPRSLCNACGLNWANKGT 217
               ******999*************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MYEQSQPMNI PAQIAGSVAD VGEDVSASTS VDNHHTVSYD GHTLDDAVGV EDVGADPIYG  60
STPLVSASHF VDLPGVDCAT QLTLSFRGQV YVFDAITPDK AVEIPSRCHQ PHRAASLDRF  120
RQKRKERCFD KKVRYGVRQE VALRMQRNKG QFSSAKKSDG SDSWGNSQDS GQDENLSETL  180
CTHCGISSKC TPMMRRGPSG PRSLCNACGL NWANKGTLRD LLKKTRDHSQ TPVEQGESDQ  240
ANDSDCGTAI PTESNIVSFS NGDDTTLMAE AEQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.22e-75GATA family protein