PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO50806
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GATA
Protein Properties Length: 356aa    MW: 38827.9 Da    PI: 4.447
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO50806genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.74.9e-16213249135
      GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
               C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  OMO50806 213 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 249
               *******99*************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    
MAAANPQPLQ ALPFEDHAPG TIQIEDEDGD YEDDTMDEME DSNVNSVNVA EHGIEVMRGV  60
NGGGGAAGGA VVMASRTSEL TLSFEGEVYV FPAVTPEKVQ AVLLLLGGRD IPTGVPTIEV  120
PFDQNNRGVG DVPKRSNLSR RIASLVRFRE KRKERCFDKK IRYTVRKEVA QRMHRKNGQF  180
ASLKESTSTS SWDSSQTGLQ DGNPRPETVV RRCQHCGVSE NNTPAMRRGP AGPRTLCNAC  240
GLMWANKGTL RDLSKGGRNI SMDQPETPLD VKPSIVEGDF SGNRDEHGNN LKQVTDESNN  300
ASVNPDEEDL HESAEDLTNS MPMGLVHPSA DDDEQEPLVE LANPSDTDID IPSTFD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-67GATA family protein