PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO50111

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NF-X1

Protein Properties

Length: 878aa MW: 98362 Da PI: 8.3764

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO50111	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	16.1	2.5e-05	192	210	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG H C lCH+GpCp+Cp+ OMO50111 192 CG-HFCLLLCHPGPCPSCPK 210 .*************96 PP
2	zf-NF-X1	16.7	1.7e-05	297	316	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CGkH C++ CH G+C+ Cp+ OMO50111 297 CGKHFCERGCHVGDCGDCPL 316 ******************95 PP
3	zf-NF-X1	16.9	1.3e-05	404	423	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C + C+ G+CppC++ OMO50111 404 CGRHACRRRCCDGNCPPCSE 423 ******************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 878 aa Download sequence
MTTIANYQPP QPSQPPFSDS DSDSDSDNFH IGSDLSNSIF KTYLEFSSSS SSSSSSITPA 60 DLSKIQSFLT SSSSGALSCL ICLERIRNSD PTWSCSSLCF TLFHLICIQS WARQASDLSA 120 ARAAARLPIT AETAAKQATW NCPKCRSSYS KSDIPKAYCC FCGKLQDPPS DNPWILPHSC 180 GEICNRPLPN NCGHFCLLLC HPGPCPSCPK SIKARCFCGS VEDVRRCGFK NFSCNQLCNK 240 VLDCRKHKCT EICHPDTCPP CRARGIYRCR CGKKEEERDC CDRDFRCENE CKKLLNCGKH 300 FCERGCHVGD CGDCPLQGKR SCPCGKRVYE EMPCDVAAPV CGSTCNKLLN CGFHRCPERC 360 HKGPCVETCR TVVKKSCRCG GLIKEVPCYQ DLSCERKCLR MRDCGRHACR RRCCDGNCPP 420 CSEVCDKRLR CKNHKCPSPC HRGACAPCPV MVTISCICGQ THFEVPCGTE MDQKPPKCRK 480 LCKITLLCRH APNCKPHRCH YGACPQCREL CGEDYPCGHK CNLRCHGPRP PPNPEFTLKP 540 KKKKSYHKSE CTPGTPCPPC PELVWRPCVG HHIGAERMMV CSDRARFSCD NLCGNLLPCG 600 NHYCTNTCHP LEIRSSSSGY QKRSESCEEC NLPCQKERIP KCSHPCPLPC HPEECPPCKV 660 LVKRSCHCGA MVHAFECINY NSLSEKDQVA VRSCGGPCHR KLPNCTHLCP ETCHAGLCPA 720 PEKCSKKVTV RCKCQTLKKE WVCQDVQAAY RDTGCDPKDI TKNQFGLGLL PCNSDCKSKV 780 QEVESALKLR KPEVLEKKEP ENEKHGPKRR KRRNRTQEGN QETRLQKFVA TMKRLLLFII 840 IVVAVIAVTY FGYKGLLRLS DWMNEVDVQR QKRRHPRF

Sequence ? help Back to Top

Protein Sequence Length: 878 aa Download sequence

MTTIANYQPP QPSQPPFSDS DSDSDSDNFH IGSDLSNSIF KTYLEFSSSS SSSSSSITPA  60
DLSKIQSFLT SSSSGALSCL ICLERIRNSD PTWSCSSLCF TLFHLICIQS WARQASDLSA  120
ARAAARLPIT AETAAKQATW NCPKCRSSYS KSDIPKAYCC FCGKLQDPPS DNPWILPHSC  180
GEICNRPLPN NCGHFCLLLC HPGPCPSCPK SIKARCFCGS VEDVRRCGFK NFSCNQLCNK  240
VLDCRKHKCT EICHPDTCPP CRARGIYRCR CGKKEEERDC CDRDFRCENE CKKLLNCGKH  300
FCERGCHVGD CGDCPLQGKR SCPCGKRVYE EMPCDVAAPV CGSTCNKLLN CGFHRCPERC  360
HKGPCVETCR TVVKKSCRCG GLIKEVPCYQ DLSCERKCLR MRDCGRHACR RRCCDGNCPP  420
CSEVCDKRLR CKNHKCPSPC HRGACAPCPV MVTISCICGQ THFEVPCGTE MDQKPPKCRK  480
LCKITLLCRH APNCKPHRCH YGACPQCREL CGEDYPCGHK CNLRCHGPRP PPNPEFTLKP  540
KKKKSYHKSE CTPGTPCPPC PELVWRPCVG HHIGAERMMV CSDRARFSCD NLCGNLLPCG  600
NHYCTNTCHP LEIRSSSSGY QKRSESCEEC NLPCQKERIP KCSHPCPLPC HPEECPPCKV  660
LVKRSCHCGA MVHAFECINY NSLSEKDQVA VRSCGGPCHR KLPNCTHLCP ETCHAGLCPA  720
PEKCSKKVTV RCKCQTLKKE WVCQDVQAAY RDTGCDPKDI TKNQFGLGLL PCNSDCKSKV  780
QEVESALKLR KPEVLEKKEP ENEKHGPKRR KRRNRTQEGN QETRLQKFVA TMKRLLLFII  840
IVVAVIAVTY FGYKGLLRLS DWMNEVDVQR QKRRHPRF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	807	813	PKRRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein

Link Out ? help Back to Top
Ensembl	OMO50111