PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO50075 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | LBD | ||||||||
Protein Properties | Length: 172aa MW: 19233 Da PI: 8.1118 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.2 | 1.8e-40 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+l+r+C+++C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i lq+++ +l+++lal++++ OMO50075 11 SCAACKLLKRRCTPNCIFAPYFRSDEPKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRRMIELQHDLALARAR 110 6**********************************************************************************************99875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence |
MRTHEPRSSS SCAACKLLKR RCTPNCIFAP YFRSDEPKKF AKVHKVFGAS NVSKILIEVP 60 EEQREDTVNS LAYEAEARLR DPVYGCIGAI ALLQRRMIEL QHDLALARAR LARYAATTTS 120 PAAIISNDRL SMAPFGEFPA ACGGFIDSFY QTSSEVLNQE ANMYDFSQIP YI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 1e-61 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO50075 |