PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO50069

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB_related

Protein Properties

Length: 284aa MW: 31686.6 Da PI: 6.5012

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO50069	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.3	2.8e-13	72	118	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+++E+rRRdriN ++ Lr+l+Pk+ K++Ka+ L A+e +k+L OMO50069 72 KSHSQAEKRRRDRINAQLAALRKLIPKS-----DKMDKAALLGSAIEQVKDL 118 68***********************8.....7***********99988 PP
2	Myb_DNA-binding	55.9	1e-17	226	271	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l+++v+q+G+++W+ I++ + gR++k+c++rw + OMO50069 226 KGSWSPQEDANLIELVEQHGPRNWSVISSGTP-GRSGKSCRLRWCNQ 271 799***************************.*********985 PP

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence
MENCYHSTWP DSENWVDFNS TPSNESSFIF PWSIEQPQFS ASSSVQYCQA NFPSWEIPIE 60 GIAEDKATAV SKSHSQAEKR RRDRINAQLA ALRKLIPKSD KMDKAALLGS AIEQVKDLKQ 120 KATEVSKIFT VPTEIDEVTV DCDDVPNITR QNNEDKIFIR ASVCCDDRPE VFAELIRVLK 180 GLRLSTVKAD ICSVGGRMRS NLILCNSNNE DQCVSVINGG STDRVKGSWS PQEDANLIEL 240 VEQHGPRNWS VISSGTPGRS GKSCRLRWCN QLSPAVQHRC VGRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	8e-53	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO50069