PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO50004
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 476aa    MW: 53639.7 Da    PI: 6.1619
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO50004genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS462.42.7e-141454701373
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               l++lL++cA++v++g+le+a+  L+++s+laspdgd+mqR+aayfteALa r+++ +++l kal++++ s  ++s+e+ + klf+e++P+lk++++++Nqa
  OMO50004  45 LIHLLVACANHVAAGSLENANIGLEQISHLASPDGDTMQRIAAYFTEALADRMLKAWPGLHKALNSTKIS--SVSDEILVKKLFFELCPFLKLAYIITNQA 143
               689*************************************************************999998..6**************************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal 202
               I+ea+ege++vHiiD+d s+++QW++L+q++++Rpegpp+lRiTg+++    +ke le+++ rL++ Ae+l++pf+fn+ ++ +le+l+le+Lrvk+gEal
  OMO50004 144 IVEAMEGEKMVHIIDLDSSEPAQWINLFQTFSARPEGPPHLRITGIHE----QKEVLEQMALRLTEEAEKLDIPFQFNP-IVCKLENLDLENLRVKTGEAL 239
               ************************************************....9**************************.5788***************** PP

      GRAS 203 aVnlvlqlhrll..........................................................desvsles..erdevLklvkslsPkvvvvve 243
               aV++vlqlh+ll                                                          ++++sl+   ++ ++L++++ lsPkv+vv+e
  OMO50004 240 AVSSVLQLHSLLatddemlrrninspsisrnlntnlshrvlqmnhrtlgewlerdpvhiyspsssdlpspSSPLSLAPapRIGSFLNALRALSPKVIVVTE 340
               ********************************************************************9977777766668999***************** PP

      GRAS 244 qeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
               qe++hn++++++r++eal++y+alfd+l+++++r++ er+kvE++l+g+ei+n++aceg err rhe+lekW  rle aGF+ vpls++ + qa +ll+  
  OMO50004 341 QESNHNGATLMDRVMEALNFYAALFDCLQSTVSRAQVERQKVEKMLFGEEIKNIIACEGLERRDRHEKLEKWILRLELAGFGRVPLSYHGMLQAGRLLQSN 441
               ***************************************************************************************************** PP

      GRAS 345 ksdgyrveeesgslvlgWkdrpLvsvSaW 373
               + dgy+++ee+g+lv++W++r+L+s+SaW
  OMO50004 442 NYDGYKIKEENGCLVMCWQERALYSISAW 470
               ***************************** PP

Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    
MIQEGPSSVT SSPLQFFPWM SLSPGLGSPF PWLRELKSEE RGLCLIHLLV ACANHVAAGS  60
LENANIGLEQ ISHLASPDGD TMQRIAAYFT EALADRMLKA WPGLHKALNS TKISSVSDEI  120
LVKKLFFELC PFLKLAYIIT NQAIVEAMEG EKMVHIIDLD SSEPAQWINL FQTFSARPEG  180
PPHLRITGIH EQKEVLEQMA LRLTEEAEKL DIPFQFNPIV CKLENLDLEN LRVKTGEALA  240
VSSVLQLHSL LATDDEMLRR NINSPSISRN LNTNLSHRVL QMNHRTLGEW LERDPVHIYS  300
PSSSDLPSPS SPLSLAPAPR IGSFLNALRA LSPKVIVVTE QESNHNGATL MDRVMEALNF  360
YAALFDCLQS TVSRAQVERQ KVEKMLFGEE IKNIIACEGL ERRDRHEKLE KWILRLELAG  420
FGRVPLSYHG MLQAGRLLQS NNYDGYKIKE ENGCLVMCWQ ERALYSISAW GFRRYD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein