PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO50004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | GRAS | ||||||||
Protein Properties | Length: 476aa MW: 53639.7 Da PI: 6.1619 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 462.4 | 2.7e-141 | 45 | 470 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 l++lL++cA++v++g+le+a+ L+++s+laspdgd+mqR+aayfteALa r+++ +++l kal++++ s ++s+e+ + klf+e++P+lk++++++Nqa OMO50004 45 LIHLLVACANHVAAGSLENANIGLEQISHLASPDGDTMQRIAAYFTEALADRMLKAWPGLHKALNSTKIS--SVSDEILVKKLFFELCPFLKLAYIITNQA 143 689*************************************************************999998..6**************************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal 202 I+ea+ege++vHiiD+d s+++QW++L+q++++Rpegpp+lRiTg+++ +ke le+++ rL++ Ae+l++pf+fn+ ++ +le+l+le+Lrvk+gEal OMO50004 144 IVEAMEGEKMVHIIDLDSSEPAQWINLFQTFSARPEGPPHLRITGIHE----QKEVLEQMALRLTEEAEKLDIPFQFNP-IVCKLENLDLENLRVKTGEAL 239 ************************************************....9**************************.5788***************** PP GRAS 203 aVnlvlqlhrll..........................................................desvsles..erdevLklvkslsPkvvvvve 243 aV++vlqlh+ll ++++sl+ ++ ++L++++ lsPkv+vv+e OMO50004 240 AVSSVLQLHSLLatddemlrrninspsisrnlntnlshrvlqmnhrtlgewlerdpvhiyspsssdlpspSSPLSLAPapRIGSFLNALRALSPKVIVVTE 340 ********************************************************************9977777766668999***************** PP GRAS 244 qeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344 qe++hn++++++r++eal++y+alfd+l+++++r++ er+kvE++l+g+ei+n++aceg err rhe+lekW rle aGF+ vpls++ + qa +ll+ OMO50004 341 QESNHNGATLMDRVMEALNFYAALFDCLQSTVSRAQVERQKVEKMLFGEEIKNIIACEGLERRDRHEKLEKWILRLELAGFGRVPLSYHGMLQAGRLLQSN 441 ***************************************************************************************************** PP GRAS 345 ksdgyrveeesgslvlgWkdrpLvsvSaW 373 + dgy+++ee+g+lv++W++r+L+s+SaW OMO50004 442 NYDGYKIKEENGCLVMCWQERALYSISAW 470 ***************************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence |
MIQEGPSSVT SSPLQFFPWM SLSPGLGSPF PWLRELKSEE RGLCLIHLLV ACANHVAAGS 60 LENANIGLEQ ISHLASPDGD TMQRIAAYFT EALADRMLKA WPGLHKALNS TKISSVSDEI 120 LVKKLFFELC PFLKLAYIIT NQAIVEAMEG EKMVHIIDLD SSEPAQWINL FQTFSARPEG 180 PPHLRITGIH EQKEVLEQMA LRLTEEAEKL DIPFQFNPIV CKLENLDLEN LRVKTGEALA 240 VSSVLQLHSL LATDDEMLRR NINSPSISRN LNTNLSHRVL QMNHRTLGEW LERDPVHIYS 300 PSSSDLPSPS SPLSLAPAPR IGSFLNALRA LSPKVIVVTE QESNHNGATL MDRVMEALNF 360 YAALFDCLQS TVSRAQVERQ KVEKMLFGEE IKNIIACEGL ERRDRHEKLE KWILRLELAG 420 FGRVPLSYHG MLQAGRLLQS NNYDGYKIKE ENGCLVMCWQ ERALYSISAW GFRRYD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO50004 |