PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GBG91598.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
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Family | AP2 | ||||||||
Protein Properties | Length: 1285aa MW: 134615 Da PI: 6.394 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.5 | 1.2e-11 | 195 | 242 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+G++ ++ grW A+I++ r+ ++lg+f+t+eeAa a+++a k++g GBG91598.1 195 SRYRGITAHH--GRWQARIKEA-----RRDIHLGYFDTEEEAAHAYDRAVIKFRG 242 78****9876..*********3.....5**********************99997 PP | |||||||
2 | AP2 | 50.1 | 6.9e-16 | 583 | 630 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+G+++++ grW A+I+d rk ++lg+++t+eeAa+a+++a++k++g GBG91598.1 583 SQYRGITRHH--GRWQARIKDS-----RKDIHLGYYDTEEEAARAYDRAALKYRG 630 78*****876..*********4.....5*************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1285 aa Download sequence |
MAAGQGFRLF TEKKVSKHCA MADMTSSTSR QKSAGNNGAT FGGWKGPTRY AERVTPEDLI 60 TSLRTTGRAD LRPVRTYVKP VGFVSSSSPQ LPALAASSSS PAVVDDSGFM ALATAASSSS 120 GEEPTSCSVQ TTTWCADRGE MGWCPVEGTA LGVGAAAAAA AAAAAAASAA AAAAAAGNAG 180 GGGFVARGWK SPRGSRYRGI TAHHGRWQAR IKEARRDIHL GYFDTEEEAA HAYDRAVIKF 240 RGGNAATNFC ISDYIDLLDA EQNAAGLGSG LSHEMESQKG PLPIDCERSK HAKPLPPSIL 300 QGCFPLSSPA SRSLHTCPRC GKPKRGHACI MDGRAAVAAA AARPTTPFAI PFPSNEEFSA 360 AMVNGMVRVT TQQQLGSAAG HPATGTQHPP SYLHLGVPST LFTPMDGTKP GAGVGGGGGG 420 GSGGTGGDQW HMHGIPPSAQ TGLVSGTPIL GAPIGSASTS GSSACFSVTE SGTSATSTQS 480 TAFGGMKMGV CGSEVAAHFP SMGAPVGRCN EYITVGACLP ARLVEDGVEL RESCRTEQGP 540 GLDTGASHPT TPFLTVDTSL TEPGFEKEGL VQRSRRRAFR RSSQYRGITR HHGRWQARIK 600 DSRKDIHLGY YDTEEEAARA YDRAALKYRG VTALTNFPMT EYAPGLLLGH GCAADESSTG 660 NKDFLNGWSG GNNPQVRVGS EQSQGNMADG ELEARVAEAG SSMALACIPS NGEDMCGEAK 720 VESEENDAKR MRGVCEGGDR GVCSALILFD DTACFGEESG AWHAVEGTHD GIGSVGEGAC 780 IRQDESMVQL EPIGNQPTEG AQSEGSLEVT VDQQTQDQDR MEVQERQGIP SDPSVSLECA 840 DNKRLSGGKM DNMQDSHGWE RVVFCTEDVG DRHGAESSDG PPMGDGTNPS AMPLRSTERM 900 AVSRVESYGT AVQDRGLNSG LASEQVFMSS IGGECTSSRD NGASTAEGQG GVPRVCEMES 960 AEASPKREGA DLSTQGVEAL IEAARQVPII MNEGRQQKQG RGDKSAYVET HGECLASVDA 1020 CKRGDGGKVE ERQELFTNCS QGLVLGRVAG ERAVEFRSGA TQGRLCAAVD DMGAGRAIDG 1080 REGSVIAGAA GMDANRRMME GGGPEAVNWP AGEDIDANDM IPTGLDRCFG GHIGGGCDVS 1140 GGNCKVQSGS EGIRGCSNGS CGSKTFCGKR CRSRVTCCAE RMLTNGRLSC GISTCLAVDN 1200 VSSRSLGRRV LRSWSDELHR RRLTLDLAQK HPNESMRKKR LFRERAGGGI RDQAVMDCRL 1260 QMGMESRTLL CQGGFSWRER KVSSA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1220 | 1240 | RRRLTLDLAQKHPNESMRKKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 5e-16 | AP2 family protein |