PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG91597.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

AP2

Protein Properties

Length: 1234aa MW: 129228 Da PI: 6.6465

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG91597.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36.6	1.1e-11	195	242	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+G++ ++ grW A+I++ r+ ++lg+f+t+eeAa a+++a k++g GBG91597.1 195 SRYRGITAHH--GRWQARIKEA-----RRDIHLGYFDTEEEAAHAYDRAVIKFRG 242 78**9876..*****3.....5********************99997 PP
2	AP2	50.2	6.6e-16	532	579	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+G+++++ grW A+I+d rk ++lg+++t+eeAa+a+++a++k++g GBG91597.1 532 SQYRGITRHH--GRWQARIKDS-----RKDIHLGYYDTEEEAARAYDRAALKYRG 579 78***876..*****4.....5***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1234 aa Download sequence
MAAGQGFRLF TEKKVSKHCA MADMTSSTSR QKSAGNNGAT FGGWKGPTRY AERVTPEDLI 60 TSLRTTGRAD LRPVRTYVKP VGFVSSSSPQ LPALAASSSS PAVVDDSGFM ALATAASSSS 120 GEEPTSCSVQ TTTWCADRGE MGWCPVEGTA LGVGAAAAAA AAAAAAASAA AAAAAAGNAG 180 GGGFVARGWK SPRGSRYRGI TAHHGRWQAR IKEARRDIHL GYFDTEEEAA HAYDRAVIKF 240 RGGNAATNFC ISDYIDLLDA EQNAAGLGSG LSHEMESQKG PLPIDCERSK HAKPLPPSIL 300 QGCFPLSSPA SRSLHTCPRC GKPKRGHACI MDGRAAVAAA AARPTTPFAI PFPSNEEFSA 360 AMVNGMVRVT TQQQLGSAAG HPATGTQHPP SYLHLGVPST LFTPMDGTKP GAGVGGGGGG 420 GSGGTGGDQW HMHGIPPSAQ TGLVSGTPIL GAPIGSASTS GSSACFSVTE SGTSATSTQS 480 TAFGGMKMGV CGSEVAAHFP SMGAPVGRCN EPGFEKEGLV QRSRRRAFRR SSQYRGITRH 540 HGRWQARIKD SRKDIHLGYY DTEEEAARAY DRAALKYRGV TALTNFPMTE YAPGLLLGHG 600 CAADESSTGN KDFLNGWSGG NNPQVRVGSE QSQGNMADGE LEARVAEAGS SMALACIPSN 660 GEDMCGEAKV ESEENDAKRM RGVCEGGDRG VCSALILFDD TACFGEESGA WHAVEGTHDG 720 IGSVGEGACI RQDESMVQLE PIGNQPTEGA QSEGSLEVTV DQQTQDQDRM EVQERQGIPS 780 DPSVSLECAD NKRLSGGKMD NMQDSHGWER VVFCTEDVGD RHGAESSDGP PMGDGTNPSA 840 MPLRSTERMA VSRVESYGTA VQDRGLNSGL ASEQVFMSSI GGECTSSRDN GASTAEGQGG 900 VPRVCEMESA EASPKREGAD LSTQGVEALI EAARQVPIIM NEGRQQKQGR GDKSAYVETH 960 GECLASVDAC KRGDGGKVEE RQELFTNCSQ GLVLGRVAGE RAVEFRSGAT QGRLCAAVDD 1020 MGAGRAIDGR EGSVIAGAAG MDANRRMMEG GGPEAVNWPA GEDIDANDMI PTGLDRCFGG 1080 HIGGGCDVSG GNCKVQSGSE GIRGCSNGSC GSKTFCGKRC RSRVTCCAER MLTNGRLSCG 1140 ISTCLAVDNV SSRSLGRRVL RSWSDELHRR RLTLDLAQKH PNESMRKKRL FRERAGGGIR 1200 DQAVMDCRLQ MGMESRTLLC QGGFSWRERK VSSA

Sequence ? help Back to Top

Protein Sequence Length: 1234 aa Download sequence

MAAGQGFRLF TEKKVSKHCA MADMTSSTSR QKSAGNNGAT FGGWKGPTRY AERVTPEDLI  60
TSLRTTGRAD LRPVRTYVKP VGFVSSSSPQ LPALAASSSS PAVVDDSGFM ALATAASSSS  120
GEEPTSCSVQ TTTWCADRGE MGWCPVEGTA LGVGAAAAAA AAAAAAASAA AAAAAAGNAG  180
GGGFVARGWK SPRGSRYRGI TAHHGRWQAR IKEARRDIHL GYFDTEEEAA HAYDRAVIKF  240
RGGNAATNFC ISDYIDLLDA EQNAAGLGSG LSHEMESQKG PLPIDCERSK HAKPLPPSIL  300
QGCFPLSSPA SRSLHTCPRC GKPKRGHACI MDGRAAVAAA AARPTTPFAI PFPSNEEFSA  360
AMVNGMVRVT TQQQLGSAAG HPATGTQHPP SYLHLGVPST LFTPMDGTKP GAGVGGGGGG  420
GSGGTGGDQW HMHGIPPSAQ TGLVSGTPIL GAPIGSASTS GSSACFSVTE SGTSATSTQS  480
TAFGGMKMGV CGSEVAAHFP SMGAPVGRCN EPGFEKEGLV QRSRRRAFRR SSQYRGITRH  540
HGRWQARIKD SRKDIHLGYY DTEEEAARAY DRAALKYRGV TALTNFPMTE YAPGLLLGHG  600
CAADESSTGN KDFLNGWSGG NNPQVRVGSE QSQGNMADGE LEARVAEAGS SMALACIPSN  660
GEDMCGEAKV ESEENDAKRM RGVCEGGDRG VCSALILFDD TACFGEESGA WHAVEGTHDG  720
IGSVGEGACI RQDESMVQLE PIGNQPTEGA QSEGSLEVTV DQQTQDQDRM EVQERQGIPS  780
DPSVSLECAD NKRLSGGKMD NMQDSHGWER VVFCTEDVGD RHGAESSDGP PMGDGTNPSA  840
MPLRSTERMA VSRVESYGTA VQDRGLNSGL ASEQVFMSSI GGECTSSRDN GASTAEGQGG  900
VPRVCEMESA EASPKREGAD LSTQGVEALI EAARQVPIIM NEGRQQKQGR GDKSAYVETH  960
GECLASVDAC KRGDGGKVEE RQELFTNCSQ GLVLGRVAGE RAVEFRSGAT QGRLCAAVDD  1020
MGAGRAIDGR EGSVIAGAAG MDANRRMMEG GGPEAVNWPA GEDIDANDMI PTGLDRCFGG  1080
HIGGGCDVSG GNCKVQSGSE GIRGCSNGSC GSKTFCGKRC RSRVTCCAER MLTNGRLSCG  1140
ISTCLAVDNV SSRSLGRRVL RSWSDELHRR RLTLDLAQKH PNESMRKKRL FRERAGGGIR  1200
DQAVMDCRLQ MGMESRTLLC QGGFSWRERK VSSA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1169	1189	RRRLTLDLAQKHPNESMRKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	5e-16	AP2 family protein