PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG91596.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

AP2

Protein Properties

Length: 1290aa MW: 135238 Da PI: 6.5036

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG91596.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36.5	1.2e-11	195	242	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+G++ ++ grW A+I++ r+ ++lg+f+t+eeAa a+++a k++g GBG91596.1 195 SRYRGITAHH--GRWQARIKEA-----RRDIHLGYFDTEEEAAHAYDRAVIKFRG 242 78**9876..*****3.....5********************99997 PP
2	AP2	50.1	7e-16	583	630	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+G+++++ grW A+I+d rk ++lg+++t+eeAa+a+++a++k++g GBG91596.1 583 SQYRGITRHH--GRWQARIKDS-----RKDIHLGYYDTEEEAARAYDRAALKYRG 630 78***876..*****4.....5***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1290 aa Download sequence
MAAGQGFRLF TEKKVSKHCA MADMTSSTSR QKSAGNNGAT FGGWKGPTRY AERVTPEDLI 60 TSLRTTGRAD LRPVRTYVKP VGFVSSSSPQ LPALAASSSS PAVVDDSGFM ALATAASSSS 120 GEEPTSCSVQ TTTWCADRGE MGWCPVEGTA LGVGAAAAAA AAAAAAASAA AAAAAAGNAG 180 GGGFVARGWK SPRGSRYRGI TAHHGRWQAR IKEARRDIHL GYFDTEEEAA HAYDRAVIKF 240 RGGNAATNFC ISDYIDLLDA EQNAAGLGSG LSHEMESQKG PLPIDCERSK HAKPLPPSIL 300 QGCFPLSSPA SRSLHTCPRC GKPKRGHACI MDGRAAVAAA AARPTTPFAI PFPSNEEFSA 360 AMVNGMVRVT TQQQLGSAAG HPATGTQHPP SYLHLGVPST LFTPMDGTKP GAGVGGGGGG 420 GSGGTGGDQW HMHGIPPSAQ TGLVSGTPIL GAPIGSASTS GSSACFSVTE SGTSATSTQS 480 TAFGGMKMGV CGSEVAAHFP SMGAPVGRCN EYITVGACLP ARLVEDGVEL RESCRTEQGP 540 GLDTGASHPT TPFLTVDTSL TEPGFEKEGL VQRSRRRAFR RSSQYRGITR HHGRWQARIK 600 DSRKDIHLGY YDTEEEAARA YDRAALKYRG VTALTNFPMT EYAPGLLLGH GCAADESSTG 660 NKDFLNGWSG GNNPQVRVGS EQSQGNMADG ELEARVAEAG SSMALACIPS NGEDMCGEAK 720 VESEENDAKR MRGVCEGGDR GVCSALILFD DTACFGEESG AWHAVEGTHD GIGSVGEGAC 780 IRQDESMVQL EPIGNQPTEG AQSEGSLEVT VDQQTQDQDR MEVQERQGIP SDPSVSLECA 840 DNKRLSGGKM DNMQDSHGWE RVVFCTEDVG DRHGAESSDG PPMGDGTNPS AMPLRSTERM 900 AVSRVESYGT AVQDRGLNSG LASEQVFMSS IGGECTSSRD NGASTAEGQG GVPRVCEMES 960 AEASPKREGA DLSTQGVEAL IEAARQVPII MNEGRQQKQG RGDKSAYVET HGECLASVDA 1020 CKRGDGGKVE ERQELFTNCS QGLVLGRVAG ERAVEFRSGA TQGRLCAAVD DMGAGRAIDG 1080 REGSVIAGAA GMDANRRMME GGGPEAVNWP AGEDIDANDM IPTGLDRCFG GHIGGGCDVS 1140 GGNCKVQSGS EGIRGCSNGS CGSKTFCGKR CRSRVTCCAE RMLTNGRLSC GISTCLAVDN 1200 VSSRSLGRRV LRSWSDELHR RRLTLDLAQK HPNESMRKKR LFRERAGGGI RDQAVMDCRL 1260 QMGMESRTLL CQGGFSWRER KLQGQARSRA

Sequence ? help Back to Top

Protein Sequence Length: 1290 aa Download sequence

MAAGQGFRLF TEKKVSKHCA MADMTSSTSR QKSAGNNGAT FGGWKGPTRY AERVTPEDLI  60
TSLRTTGRAD LRPVRTYVKP VGFVSSSSPQ LPALAASSSS PAVVDDSGFM ALATAASSSS  120
GEEPTSCSVQ TTTWCADRGE MGWCPVEGTA LGVGAAAAAA AAAAAAASAA AAAAAAGNAG  180
GGGFVARGWK SPRGSRYRGI TAHHGRWQAR IKEARRDIHL GYFDTEEEAA HAYDRAVIKF  240
RGGNAATNFC ISDYIDLLDA EQNAAGLGSG LSHEMESQKG PLPIDCERSK HAKPLPPSIL  300
QGCFPLSSPA SRSLHTCPRC GKPKRGHACI MDGRAAVAAA AARPTTPFAI PFPSNEEFSA  360
AMVNGMVRVT TQQQLGSAAG HPATGTQHPP SYLHLGVPST LFTPMDGTKP GAGVGGGGGG  420
GSGGTGGDQW HMHGIPPSAQ TGLVSGTPIL GAPIGSASTS GSSACFSVTE SGTSATSTQS  480
TAFGGMKMGV CGSEVAAHFP SMGAPVGRCN EYITVGACLP ARLVEDGVEL RESCRTEQGP  540
GLDTGASHPT TPFLTVDTSL TEPGFEKEGL VQRSRRRAFR RSSQYRGITR HHGRWQARIK  600
DSRKDIHLGY YDTEEEAARA YDRAALKYRG VTALTNFPMT EYAPGLLLGH GCAADESSTG  660
NKDFLNGWSG GNNPQVRVGS EQSQGNMADG ELEARVAEAG SSMALACIPS NGEDMCGEAK  720
VESEENDAKR MRGVCEGGDR GVCSALILFD DTACFGEESG AWHAVEGTHD GIGSVGEGAC  780
IRQDESMVQL EPIGNQPTEG AQSEGSLEVT VDQQTQDQDR MEVQERQGIP SDPSVSLECA  840
DNKRLSGGKM DNMQDSHGWE RVVFCTEDVG DRHGAESSDG PPMGDGTNPS AMPLRSTERM  900
AVSRVESYGT AVQDRGLNSG LASEQVFMSS IGGECTSSRD NGASTAEGQG GVPRVCEMES  960
AEASPKREGA DLSTQGVEAL IEAARQVPII MNEGRQQKQG RGDKSAYVET HGECLASVDA  1020
CKRGDGGKVE ERQELFTNCS QGLVLGRVAG ERAVEFRSGA TQGRLCAAVD DMGAGRAIDG  1080
REGSVIAGAA GMDANRRMME GGGPEAVNWP AGEDIDANDM IPTGLDRCFG GHIGGGCDVS  1140
GGNCKVQSGS EGIRGCSNGS CGSKTFCGKR CRSRVTCCAE RMLTNGRLSC GISTCLAVDN  1200
VSSRSLGRRV LRSWSDELHR RRLTLDLAQK HPNESMRKKR LFRERAGGGI RDQAVMDCRL  1260
QMGMESRTLL CQGGFSWRER KLQGQARSRA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1220	1240	RRRLTLDLAQKHPNESMRKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	5e-16	AP2 family protein