PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG91149.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

C3H

Protein Properties

Length: 361aa MW: 37459.9 Da PI: 8.2638

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG91149.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20	1.2e-06	22	45	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t +C+ f C+yGdrC+F H+ GBG91149.1 22 TDECHKFNTPEGCPYGDRCRFRHP 45 789*******************98 PP
2	zf-CCCH	18.4	3.8e-06	69	90	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 + C f+ t C+yG++C+F H GBG91149.1 69 KACTKFFSTSGCPYGENCHFLH 90 579999999************* PP
3	zf-CCCH	33.8	5.8e-11	124	150	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 yk +lC+++++ G C++Gd+C+FaHg+ GBG91149.1 124 YKARLCNRYREPGGCRFGDKCHFAHGE 150 899**********************96 PP
4	zf-CCCH	23.1	1.3e-07	307	331	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C ++ GtC +GdrC+FaHg GBG91149.1 307 YKTKMCENYPG-GTCTFGDRCHFAHG 331 89999999998.*************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MEGSGPPHKR LRVGASGAGD PTDECHKFNT PEGCPYGDRC RFRHPTASGE DARQDGAGPQ 60 PPAPGSRSKA CTKFFSTSGC PYGENCHFLH YVPGGISAIA HALAAAQNGQ ASGIMDAGVN 120 LGGYKARLCN RYREPGGCRF GDKCHFAHGE HELQPDPAGG GDLQQGGAGQ IGRGGSGSAV 180 SGQFGGMVGV GRENGRGGLF PPGTGPEMSA SMSAAASFGQ STTTKISIDA NLVGAIIGKA 240 GANVKQICKL TGAKVSIRDH ESETNLRNVE MEGSLEQIEK ASNMVRQFLM QRDLTPSKPP 300 GLGPHNYKTK MCENYPGGTC TFGDRCHFAH GAHELKDPPP DVGAGGGMVG RSLSRPRGMV 360 I

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MEGSGPPHKR LRVGASGAGD PTDECHKFNT PEGCPYGDRC RFRHPTASGE DARQDGAGPQ  60
PPAPGSRSKA CTKFFSTSGC PYGENCHFLH YVPGGISAIA HALAAAQNGQ ASGIMDAGVN  120
LGGYKARLCN RYREPGGCRF GDKCHFAHGE HELQPDPAGG GDLQQGGAGQ IGRGGSGSAV  180
SGQFGGMVGV GRENGRGGLF PPGTGPEMSA SMSAAASFGQ STTTKISIDA NLVGAIIGKA  240
GANVKQICKL TGAKVSIRDH ESETNLRNVE MEGSLEQIEK ASNMVRQFLM QRDLTPSKPP  300
GLGPHNYKTK MCENYPGGTC TFGDRCHFAH GAHELKDPPP DVGAGGGMVG RSLSRPRGMV  360
I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	2e-43	C3H family protein