PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG90823.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

CAMTA

Protein Properties

Length: 1393aa MW: 156466 Da PI: 5.7851

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG90823.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	154	3.3e-48	24	140	3	117
CG-1 3 kekkrwlkneeiaaiLenfekheltl..elktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 + kkrwlk+ e+ +L n++k+++ l +++++p gsl+L+++k ryfrkDG+sw+kk+dgk ++E+hekLK g+ e+l+cyYa++een+ fqrrcy GBG90823.1 24 QAKKRWLKPAEVEYVLRNYKKYQFDLcsKPPNKPIGGSLFLFDKKACRYFRKDGHSWQKKRDGKNIKEAHEKLKAGSLEILHCYYARAEENERFQRRCY 122 459****************99988889****************************************************************** PP CG-1 100 wlLeeelekivlvhylev 117 wlLe ++e++vlvhyle+ GBG90823.1 123 WLLEASQEHVVLVHYLET 140 *************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1393 aa Download sequence
MASSLSSKKG STKLEIDIQK IIEQAKKRWL KPAEVEYVLR NYKKYQFDLC SKPPNKPIGG 60 SLFLFDKKAC RYFRKDGHSW QKKRDGKNIK EAHEKLKAGS LEILHCYYAR AEENERFQRR 120 CYWLLEASQE HVVLVHYLET AEAALKSRGT PMKESSIPSL EESYRRNCPG AQQLPSTKVQ 180 GKPTEGEPEI IRSEREDHNI QRGASPVTPP QGAVNEQDVV EEEFDFSDLD SDGEAYEIED 240 AVLGFGDGTG VQAQSVLPVT SDGGIPSTED PDAVTSQQMT VDSLTSELEN TSIQLGLGTP 300 LTSEACSRKL QSGSTADLFV PEDFEFDRLP GAQLSAGTDN MEQSWQSHYL GPMVNGRGQV 360 DTSHCSQPDM QEEEVYRQLG LSFPPGGEEC EPVEDWVEDL ISETDQRHSS EQTSSVPWQG 420 CQVENQLRPC CGEDDTCGLQ NAQCKSGERL LEEKWETGNA YHVDCGDVEG AERDELLIPE 480 MQHLAEEQRL TLGVQGWTDH FCSPRVDEGG WMIQAAGENE RLNLMNSDQL QEMSAREVLD 540 AEAECLAPGD MSHYPVDQHM EVFHQACAQC SPNEESHLGT GGSCSPLDYP SHNLEQQQSS 600 QSANHFSIPF EQSHHDLLYI PLDLPGVLPP PSPSPPPPDP CHRHHHHHHH HHHHHICCEQ 660 QEAQEQQQHA RRQEQQLLHS LFTHPDLQMP QLHEQGHQGD SGTLIQGSDY DMAKHPGDSI 720 GSTNVNLQSM RNTALNPVEL MKHDAVGTGI SEEVDSHFLE CFERLVISKE ETCLSPFGQD 780 DNTHQQTVSN HGFFINDFAP SWVFTQDHQT KVLVAGRVQD SSVKSWFCKF GDEEVEAEVL 840 QEGVLRCKPP VREKAEKVLF SITCGDGNVC SNVKVFEYKN RGMPIEDMGL LVRLVKVVLS 900 DETESDLANQ AVRTGLDRNQ GPLGEWEWLH REELTTAYVQ EQLLQMLLRR RLSEWLYKQR 960 RQASETGGGG GCPMSGFNLL LDETGMGVAH FAAALGFDWA VSIMRAARAS MDACDIRGRT 1020 PLHWASAFGR ETTVATLLAA GATPGLLLRA SSEHEDGWTA AEIAEMAGHQ GISGLLSLRL 1080 LEKTQEAMAK KAPVEVDFMT RMQAQAAGHD AVSRAVNTII PLQGFNMMSV HFDDPNLLES 1140 REAIRRAGEA AALIQANYRK YYSQKLAKQQ ERAQKLRTMF AARVIQRAYR GYQVSQYNKR 1200 SQAATKIQKA YKGWKGRREF LAKRKKIVKL QALWRCQSQR KQYVKMKQAL AVIAVAIMRW 1260 RSRWRKAQER QILWESEQKE AMKALVSDKV GEQWRNVGGV HSPRTIERAV AQVQELAHNQ 1320 QAQASYHQMT EEYMAQKVKE HVVCLPTPFN DSVGWRTLIV GMAGMMKGAH QVQDPFPHLY 1380 ANPSDPHLTN VPP

Sequence ? help Back to Top

Protein Sequence Length: 1393 aa Download sequence

MASSLSSKKG STKLEIDIQK IIEQAKKRWL KPAEVEYVLR NYKKYQFDLC SKPPNKPIGG  60
SLFLFDKKAC RYFRKDGHSW QKKRDGKNIK EAHEKLKAGS LEILHCYYAR AEENERFQRR  120
CYWLLEASQE HVVLVHYLET AEAALKSRGT PMKESSIPSL EESYRRNCPG AQQLPSTKVQ  180
GKPTEGEPEI IRSEREDHNI QRGASPVTPP QGAVNEQDVV EEEFDFSDLD SDGEAYEIED  240
AVLGFGDGTG VQAQSVLPVT SDGGIPSTED PDAVTSQQMT VDSLTSELEN TSIQLGLGTP  300
LTSEACSRKL QSGSTADLFV PEDFEFDRLP GAQLSAGTDN MEQSWQSHYL GPMVNGRGQV  360
DTSHCSQPDM QEEEVYRQLG LSFPPGGEEC EPVEDWVEDL ISETDQRHSS EQTSSVPWQG  420
CQVENQLRPC CGEDDTCGLQ NAQCKSGERL LEEKWETGNA YHVDCGDVEG AERDELLIPE  480
MQHLAEEQRL TLGVQGWTDH FCSPRVDEGG WMIQAAGENE RLNLMNSDQL QEMSAREVLD  540
AEAECLAPGD MSHYPVDQHM EVFHQACAQC SPNEESHLGT GGSCSPLDYP SHNLEQQQSS  600
QSANHFSIPF EQSHHDLLYI PLDLPGVLPP PSPSPPPPDP CHRHHHHHHH HHHHHICCEQ  660
QEAQEQQQHA RRQEQQLLHS LFTHPDLQMP QLHEQGHQGD SGTLIQGSDY DMAKHPGDSI  720
GSTNVNLQSM RNTALNPVEL MKHDAVGTGI SEEVDSHFLE CFERLVISKE ETCLSPFGQD  780
DNTHQQTVSN HGFFINDFAP SWVFTQDHQT KVLVAGRVQD SSVKSWFCKF GDEEVEAEVL  840
QEGVLRCKPP VREKAEKVLF SITCGDGNVC SNVKVFEYKN RGMPIEDMGL LVRLVKVVLS  900
DETESDLANQ AVRTGLDRNQ GPLGEWEWLH REELTTAYVQ EQLLQMLLRR RLSEWLYKQR  960
RQASETGGGG GCPMSGFNLL LDETGMGVAH FAAALGFDWA VSIMRAARAS MDACDIRGRT  1020
PLHWASAFGR ETTVATLLAA GATPGLLLRA SSEHEDGWTA AEIAEMAGHQ GISGLLSLRL  1080
LEKTQEAMAK KAPVEVDFMT RMQAQAAGHD AVSRAVNTII PLQGFNMMSV HFDDPNLLES  1140
REAIRRAGEA AALIQANYRK YYSQKLAKQQ ERAQKLRTMF AARVIQRAYR GYQVSQYNKR  1200
SQAATKIQKA YKGWKGRREF LAKRKKIVKL QALWRCQSQR KQYVKMKQAL AVIAVAIMRW  1260
RSRWRKAQER QILWESEQKE AMKALVSDKV GEQWRNVGGV HSPRTIERAV AQVQELAHNQ  1320
QAQASYHQMT EEYMAQKVKE HVVCLPTPFN DSVGWRTLIV GMAGMMKGAH QVQDPFPHLY  1380
ANPSDPHLTN VPP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1223	1245	KRKKIVKLQALWRCQSQRKQYVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	4e-49	CAMTA family protein