PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG90413.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

MYB

Protein Properties

Length: 2035aa MW: 219163 Da PI: 8.4717

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG90413.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38	3.8e-12	25	67	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +T Ed ll+ ++k++G+++W++Ia+ + gR +k+c++rw + GBG90413.1 25 FTRKEDALLLSLIKKYGPRNWSLIASGIR-GRAGKSCRLRWCNQ 67 899************************.*********985 PP
2	Myb_DNA-binding	50.4	5e-16	74	118	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + ++T+ Ed ++ a+k++G++ W++Ia++++ gRt++ +k++w++ GBG90413.1 74 KEPFTQAEDAAIIVAHKKYGNK-WAAIAKHLP-GRTDNAIKNHWNST 118 579*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 2035 aa Download sequence
MTETGAPRGD DKGRGLQRWK AGTVFTRKED ALLLSLIKKY GPRNWSLIAS GIRGRAGKSC 60 RLRWCNQLDP VLKKEPFTQA EDAAIIVAHK KYGNKWAAIA KHLPGRTDNA IKNHWNSTLK 120 RKYPGLVTGT ELSDDVERRG PIALTEALDR SYLEAEEREQ QARQGQNPAV TATKKRRTKQ 180 RPRKGPIISS TREEDNESSE EEGGDGLEDG RNSGNETEQT FTGRTPCQRS KHGKADHSCS 240 DRLLQLAVQV TKYVTDTDRQ QEAHADHTEK RFPPDAGGGV LCAGPKRAER VPNSATSDEP 300 VSKARRQTAG SRQGRWCGGG RGGRVSKQQL GNWTAKVDGA KEGKSVGGRS SCKRSVVPPR 360 LSRCEASDGG NKRKIRERRK SLRSEACVNL TTPNDSSNGG VMSNESFLPQ DVIRRHNTRG 420 ASMAAVCIDH SIELSEGIRG AHWLSTSSSS KRKIEWDDSV CAEHTVAEQS SKLSRQSIST 480 KVGAIDSSGK KKQKMEISSS RPVRRSTSHL SPAILYTAAS SSNSGGTEGN SSGQFPLNPN 540 EVKKRPVPSG CEGYDGRERQ RMESRGGRRK QIHEAADEGR EDDNDGECEG GAAGWDQRSG 600 TSEERSDLLH QGESCAEPHE ATLTGRKGNA RKPRSSSKPV SLSESVTGMR TKVAISSQER 660 DSNLIASFRN VMNQHGIVSS SADKIAPAPS PPKPPPQCDM LQEYEKGWQA REEEMECFPD 720 PGEPSYRLRG EREKRVKIRG CSPARKTDCS DDLSLCPADH GCTTNARRVG EVFVGEGDAD 780 ATNSGLDGGK GGEARSLCSR EWEKGHVRDL PPMTAEEASD KLNHKPGIQG HGSKAFQDTD 840 AGTWTGKEPQ TLQQQAEVSR PLAARMQLKY RNRYLNPSST DRNSQEQVMQ WRLTGVRLGS 900 SVGSVISASR RRLEGAAKAF KPEQSSDPKP DNDLHGKPEH SGHGKDDLIS IVMHEPVALT 960 RHGLVLSTSP VSAGGASLLQ KDNPADLSTD SGAEVSEFSN VSLLKKGAER GSLLVTDMVN 1020 LKGSSKLLPA AQQRSSCADS LSAGGGYEPH SPCKSPPSAP AQKPSHALPK VAVDISRGAV 1080 HGQTGAFTSL SQRGLRSAES SNPPFGELKK AGALQGTQVA CDNLSLPDSN GSLSFNVAAK 1140 KRDDNSCLPI QTIAAATAAA ALARRTGQFS ERRVAKRSWP EESLLSGDAL GQLRESAITK 1200 SYLPNLPENA PRVDTPPPCQ SSAAMVHEPD HLVPGNGRTT LGCAGGEAPV TESVTTTIRH 1260 QLQSHGVART STGLHINPTT ARGSTQLDIF TPAPDGLQVH NHRIRQDNFL LSAHGTVENS 1320 RVDTLSKMSS PVAISGRIRD LCAGTKGATA FKQPPTHMAN DGIFKGPSQA VHGMRTTSPV 1380 RQPLPDVPPR DQKQQQGCSF AGDDDVLLAA VAEGAHIQMP TNEDLIRALT CHLPSFNEKL 1440 NSSNEKLVPQ EDAQCRASLT NLPQNRKPNA DTAAKDEESS QVKGKASFQQ PLSPRTLDHA 1500 CRLQHPTTSR KNQSCDEEVC IDSSADCHVV KELLPTRLMS AHSDHTQHNQ YLHHHPHSSK 1560 DTEKIVATAE REPVVQSLSG PKGNSTLYGS TSSEWMAGCT ALNGRMPSTT SESDARYKAT 1620 PILVAPREAS AESVMSLCSS SCPEKVTQTP IWNRNSDPTF VHPLAPAARM WNQHSAFSVV 1680 VSADPTLANQ RTQSPHCIHD SDSRADINQH GQMGQILADG HQETGRTAGE RRGSTLPLGS 1740 AGKADSIPGG RVLLDLATDS RDRGWSPQRV DVSTDLSRPS SCLEVDGTKG PADGHVEQSS 1800 YQREEVTPAS ARERPLPRGC VDHVQQSGDQ SCPTATIGGQ IPQGPGFLDW GTRLSLSDQL 1860 LPPVFQRSIS LSPTSSQPQP ANHAVLQPSA SLRPRAAQPH PPNYAQTSCR GGPEDSFSKD 1920 AIIGDCDSDV SLSRASTRQQ ASPQGFGTRV QNHNRVIFES EETMTSSNCT QAGQGPINSW 1980 NFATAPSASS SRVFYDFFGL GNSGRSDCKY PSGLHEKPDD PPSGKGPYAI GSLSR

Sequence ? help Back to Top

Protein Sequence Length: 2035 aa Download sequence

MTETGAPRGD DKGRGLQRWK AGTVFTRKED ALLLSLIKKY GPRNWSLIAS GIRGRAGKSC  60
RLRWCNQLDP VLKKEPFTQA EDAAIIVAHK KYGNKWAAIA KHLPGRTDNA IKNHWNSTLK  120
RKYPGLVTGT ELSDDVERRG PIALTEALDR SYLEAEEREQ QARQGQNPAV TATKKRRTKQ  180
RPRKGPIISS TREEDNESSE EEGGDGLEDG RNSGNETEQT FTGRTPCQRS KHGKADHSCS  240
DRLLQLAVQV TKYVTDTDRQ QEAHADHTEK RFPPDAGGGV LCAGPKRAER VPNSATSDEP  300
VSKARRQTAG SRQGRWCGGG RGGRVSKQQL GNWTAKVDGA KEGKSVGGRS SCKRSVVPPR  360
LSRCEASDGG NKRKIRERRK SLRSEACVNL TTPNDSSNGG VMSNESFLPQ DVIRRHNTRG  420
ASMAAVCIDH SIELSEGIRG AHWLSTSSSS KRKIEWDDSV CAEHTVAEQS SKLSRQSIST  480
KVGAIDSSGK KKQKMEISSS RPVRRSTSHL SPAILYTAAS SSNSGGTEGN SSGQFPLNPN  540
EVKKRPVPSG CEGYDGRERQ RMESRGGRRK QIHEAADEGR EDDNDGECEG GAAGWDQRSG  600
TSEERSDLLH QGESCAEPHE ATLTGRKGNA RKPRSSSKPV SLSESVTGMR TKVAISSQER  660
DSNLIASFRN VMNQHGIVSS SADKIAPAPS PPKPPPQCDM LQEYEKGWQA REEEMECFPD  720
PGEPSYRLRG EREKRVKIRG CSPARKTDCS DDLSLCPADH GCTTNARRVG EVFVGEGDAD  780
ATNSGLDGGK GGEARSLCSR EWEKGHVRDL PPMTAEEASD KLNHKPGIQG HGSKAFQDTD  840
AGTWTGKEPQ TLQQQAEVSR PLAARMQLKY RNRYLNPSST DRNSQEQVMQ WRLTGVRLGS  900
SVGSVISASR RRLEGAAKAF KPEQSSDPKP DNDLHGKPEH SGHGKDDLIS IVMHEPVALT  960
RHGLVLSTSP VSAGGASLLQ KDNPADLSTD SGAEVSEFSN VSLLKKGAER GSLLVTDMVN  1020
LKGSSKLLPA AQQRSSCADS LSAGGGYEPH SPCKSPPSAP AQKPSHALPK VAVDISRGAV  1080
HGQTGAFTSL SQRGLRSAES SNPPFGELKK AGALQGTQVA CDNLSLPDSN GSLSFNVAAK  1140
KRDDNSCLPI QTIAAATAAA ALARRTGQFS ERRVAKRSWP EESLLSGDAL GQLRESAITK  1200
SYLPNLPENA PRVDTPPPCQ SSAAMVHEPD HLVPGNGRTT LGCAGGEAPV TESVTTTIRH  1260
QLQSHGVART STGLHINPTT ARGSTQLDIF TPAPDGLQVH NHRIRQDNFL LSAHGTVENS  1320
RVDTLSKMSS PVAISGRIRD LCAGTKGATA FKQPPTHMAN DGIFKGPSQA VHGMRTTSPV  1380
RQPLPDVPPR DQKQQQGCSF AGDDDVLLAA VAEGAHIQMP TNEDLIRALT CHLPSFNEKL  1440
NSSNEKLVPQ EDAQCRASLT NLPQNRKPNA DTAAKDEESS QVKGKASFQQ PLSPRTLDHA  1500
CRLQHPTTSR KNQSCDEEVC IDSSADCHVV KELLPTRLMS AHSDHTQHNQ YLHHHPHSSK  1560
DTEKIVATAE REPVVQSLSG PKGNSTLYGS TSSEWMAGCT ALNGRMPSTT SESDARYKAT  1620
PILVAPREAS AESVMSLCSS SCPEKVTQTP IWNRNSDPTF VHPLAPAARM WNQHSAFSVV  1680
VSADPTLANQ RTQSPHCIHD SDSRADINQH GQMGQILADG HQETGRTAGE RRGSTLPLGS  1740
AGKADSIPGG RVLLDLATDS RDRGWSPQRV DVSTDLSRPS SCLEVDGTKG PADGHVEQSS  1800
YQREEVTPAS ARERPLPRGC VDHVQQSGDQ SCPTATIGGQ IPQGPGFLDW GTRLSLSDQL  1860
LPPVFQRSIS LSPTSSQPQP ANHAVLQPSA SLRPRAAQPH PPNYAQTSCR GGPEDSFSKD  1920
AIIGDCDSDV SLSRASTRQQ ASPQGFGTRV QNHNRVIFES EETMTSSNCT QAGQGPINSW  1980
NFATAPSASS SRVFYDFFGL GNSGRSDCKY PSGLHEKPDD PPSGKGPYAI GSLSR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	179	KKRRTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	7e-43	MYB family protein