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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | GBG89833.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 3994aa MW: 421182 Da PI: 4.9242 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 26 | 2.1e-08 | 2870 | 2911 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
W++eE ++ ++++++G++ W++ ++++ +++l q+k + q+
GBG89833.1 2870 TWSQEEKDKVFEVIERHGKD-WNLLQECLP-RKSLVQIKTFVQN 2911
7*****************99.*********.********99887 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 3994 aa Download sequence |
MKSVRRGVMM AVMRVRKSVR RVMMTSRRGL MSEEWGCDDD EDDDEDDDED DDKDDDEDDD 60 EDDDEDDDKD DDEDDDEEIR VCKLEMHQSN QADSRATALP NARDSSNDDA GHLAGTAISS 120 EHSWPAAERA HTVDVRQPYS RDARLDRDRD RAVGKREWAE RSGFPRMTPV TNGGGSLGMS 180 KRRGAAGSSL SVSRECSGRQ MFYGDSCRYN IGSGGGQRNS DDGTGFASSG PGSGLENGVG 240 ARKGERGDNF FGVSPSFNLV ATGGEHRLKD AEERRSALER EPGLTAYSGS GASVDARGEG 300 FLSAEAAVIR PYHSLRRLEE ERFGRLKVGN GGGAGSSLET SGGSGGVGGA AAAVGGATVN 360 LGVAGAHGVG WDLPPRAERE HRTDRIRGLK GECGYRKVGS FGSSSFISLV QESGREWNNS 420 TDRDREGMRV ERYGRDSSRG CIKANGDGSG GCGREQTPTL STMSPQQQGS SPLEWRSGGY 480 SGLRDRLGGT GTAGSWEGSS LVPNQLASMD NSARSDRRVM HHGLEDGGSG ASHVLSDPLP 540 SLSTLSSLGT PLRDDTHVSP PKRQRLGWGQ GLAKYEKEKV EEVGDGNSTA AVQSASGQKV 600 ADSVVPAHTA SSESPVEAST ASTTNPVPVP VPASDGAACS GKDDDALAPT SGGAKEGKGD 660 ASRGFTSLRP QRASSSVSLL GTSADAPSTC MPLPFAGLNL PPRTAGSLTP SPAVLTCASP 720 LPPAPSSSLF SGSHAVRSGS TQAGLLALGS AASLPTVCSS GAMGAEVATN GHRAQMGADI 780 GGPYGQIGRF PPPGSRSTST LPLNFTSGLI FPSNALRIPG YEPPITRPLK SPPPPLSPLP 840 VAPLLKTSVA PVTAMMAPKI GGASTFSASS LTPSMHVPQF SLVGNFTGLT STPSSAGVRA 900 ATTWINSVTV SATGPSAPPR CSGKAGAPQD GLRGDGHTSV GSGEQSVASS QCLTKSEKSP 960 CVGERASSLG NSHDMEKLDA EVAPPENAAE GISKLGDVGG GNVSCLSKEG KSGVVEKVES 1020 ETERREKDLA ALNVENGKND GVEPGNGSLQ PECGGNAGST SLVPNAEGEQ KNGAAGSVPA 1080 AGRDGLSQPD RSANAGSDLP VAGTEGEQKS MSASVPNQDD PMEAIASDGC ERSGGAVAET 1140 DGWTPSQPLG GDDNAEQADD AAAKRQMASM QQTDGDEVAA AMETVVCGTE EQRVREAETD 1200 APEGAAAALP EPVGMGLCLS SPDAEMGCET GAEVHDKDTG EKPCPVLEAG VAGAQPVEDK 1260 CETTGAVSVE ADMDTENVKR AAESVEQIAA AALQSISEVM CEHSSPPEEG LHVDTVAVDA 1320 VATGTVSSEA QGQEKTVDVM DIVDSTIRSS LDKLCENRRR AQLAHDALSH LLPTGMSLDP 1380 SDANKLYSTP EEAPRWKENT ASHKQVAKAM EAVLLERMKD LQFKEKVLAL KFRALRESWK 1440 HEQAMSSRKG RPVRDKHSRK SDGDKRLGPT LQTQRRARPH GGGSSSNVVD AEGFQVVKKL 1500 LAEQGVEKMR AESKMPPMIL DEKERNTNRF INTNALIRDP IALEEEKKWT KPWTAEEKKI 1560 FMEKFALFNK NFKKIASFLD DRSTGDCVMF YYLHQKSEEF TKIRCPQQLK KRSFVKPNPI 1620 FMDLSQSGVS SAGRSREATV TAYQKPAGGE GTVSARAERT AAVEPHPVIR HARTPDRGRA 1680 GPPFALEGVG SDGSKGTGQA VLAGPVDFAP GGRDSGQHHY LPPGTSGKDG SSCTVKAQRR 1740 ACKDGGGRLE VIAEELPFAS SFHPSSAELA TIGGGDGSAA AVHGAESAAT ADKINYHTSA 1800 KSGSAHPAAI PNADVVTRAW SRRQDVSQNQ SWGYVDAQNC DVSEGAHLEG HPFSQQVAAM 1860 SKRDPDVRLQ QPPAWKPEGG EWRRRGHECS PALIGGEEKD ISASVSDEDL EHKSDKTKEI 1920 SADKDMKGSS AGALAERVDG PDNCAVSVAK DGEGGGSAEK LQQNCEKSAD GRNLPAEAMD 1980 ITPAAGGRCA RTDAGIPMAE EAEDITSDVP RVNRIQDAGA ADEVSCRVEN ATLEKAHSRL 2040 AIVELPIDKV DAILSTADMQ QEGAAFAEAA RAEATALPKG LQIPDRPEEG EPQANDSSLC 2100 RDEPMEGGAD DVVYKADDVE TAATPEAGCY DSYEKSTGRS PADNNAYEVK TEGEQDAKDQ 2160 YGRGGSEGGL GAESDDRKMS RHAVGGQGEL PSGRSNVSCA DARLDGNVCQ GVDVHTDGGN 2220 HHTCKTDRGS VMSEEIEGVT GNGPLLDQQQ GTAAILNEVT HRVENTLLVM ADGKVGSLMR 2280 PLDEVGGILD ATRIQEASMA FTESERVEGN TLPECSRILN PPGEGEPEVS GSSMFRDEPM 2340 EERSADVRLK ADDIVAAPIP EMEYYDRYRV SAECSPVDDT AYEVKTERGE EEGKGQCARG 2400 GSGGGGAECE DMDIGRHGSE GQGELSGARS SASEGDESVE GNVCEAGDMA GHGSSVSCKG 2460 SVDAQVNECE AKPVHPVADN RGVERVEDGN DADLDEEEEE RQFATEIEAA VEHADDDEDE 2520 QELETEEQND DGTADADDDD DGHDGNADDE EQEGIKGDGG SGDGGSGGGG DSQRGEDVLL 2580 GRIQEMRMAV LPVKGESDPN HGVDIILDDR TASSESVENI KVEVEVEERE MMRTEGAGFH 2640 EERPWDDDGQ EVMGCRKWCE PRLRGPAWDC RNEQMHPLFV TDLRGGMEGN ERESAPCKAQ 2700 STLARPVPTL KAAGEAKAKV PKMELCSVLD IGYDRSESGK ASLGGFAQCN TSTTQYYSQE 2760 KKPSLNDHIM SKRTPPSTNL RLDGLARAGG GWENLAKPLA QKPVPASVAL PVKREKDHTG 2820 MTVGVPLNQG PGSSGSVAAG VHSVAEKDRS SSKGSGGGVG EGKVRREPTT WSQEEKDKVF 2880 EVIERHGKDW NLLQECLPRK SLVQIKTFVQ NSKAKFGAMA EGGAGALHRV GERGRKRKSE 2940 DDLVGSSSSY SVPAMASSLH RQQMSQMQVR DQHQDGQPSQ PIHPIPVAAV ISVHGSPGSP 3000 SPARVVADEA NLTGVSGTPS KGGRVQPGVV GGDATAFSPP TGIPRHMGSE MLHEHATLAA 3060 FQQMMMQMFP RNSYGPPPGA AAGMVPVFHP AHPMFTPAFT AMSRPVPVPR HPAAMPPFGL 3120 LPAGMAPVGL TPVVSPAAAQ IPGMKKADTT TSIGVPPDID VCMAPMVRGI IGGREEELLS 3180 PFAQSVKPVA TVAQAHGQGQ GQCQTHAQAQ GPSQPQAQAQ PQGQSPTHTQ PQSVWNAQVD 3240 CVPQPHSHRS QTSGDVKLFG QSLLSQPQPS NAQNEVTASG MYLRETSAPV AVVVKRAATV 3300 NTSQDGGGES DAVGQSGCCG VDGTNTCLGS SSVAGGGAFG ILSPGAGGGF VAPAAFGGPQ 3360 LMLPYASGNL HRLSALADGR EIPTVAAIPS AVRIGGPAVW TVPPRPAMAG DLWASFMAHH 3420 HHHHHPNVGQ PVAMVGREVA VDEALSRERS VHESVSRVTE RLSRKEPEGG AGSATRRSAD 3480 SGSSHSRKSG ADGGRRICPV EVVPQERMQT GPTSECERTE GASLAAADHR TEPSVAIPRS 3540 RGRGASATVE EPMDAVHDSA RDGSEQQQQQ HDSPRGISPQ HGIRTSVQSV GGPSTPGHSP 3600 TAAASVASHP RTMWDFMAAA YAQEWPGGLG GQHPSMGLGR FDCSPAGMVW DNFRRVGLVP 3660 ARGRAPVVNP LARGVLGSVG AGLNLAMPEG LQGAVREGSI YYPAAPVMPA MNMPIPPQAS 3720 AWTPATISAQ RNDAAARVMI MAMAVNKQQQ QQQQQQQHQQ QQQQQQQQQQ QQHQHQQQQQ 3780 QQQQQQQQGE GAGAGVGGDR SEDHHLPTEG RDLDMRGARD AGVTSGMDID GEDNRDMLTT 3840 TERTTVAEAV NVVLSRCQME SSEGKLKATV RAHRKLTALP TTGDGFDIGA ISDAILQVCY 3900 AMGCSAFPRA TPRWWIKRRT GGTWEDLRQC DDATIDYFKE KLRMLPRVFR EIARTLSPYL 3960 QRRVMLYRVS LQPDQIIAYT LYRWALGETH DSGT |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G52250.1 | 6e-30 | MYB family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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