PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG88391.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

AP2

Protein Properties

Length: 2240aa MW: 238578 Da PI: 8.4368

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG88391.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	44.6	3.6e-14	1325	1374	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV+++k++grW+++I++ k+++lg f ta+ Aa+ +++a +k++g GBG88391.1 1325 SDYKGVTFCKRKGRWESYIWV------DaKQVYLGGFTTADAAARVYDRAVLKFRG 1374 78*****************......44**********************998 PP
2	AP2	33.1	1.4e-10	1729	1778	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV ++++g W + I d k+++lg f ta+ Aa+a+++a +k++g GBG88391.1 1729 SNYRGVAICRRTGGWTSCISDG-----GKQVYLGGFTTADAAARAYDRAVLKFRG 1778 57**************9993.....4**********************998 PP
3	AP2	30.2	1.1e-09	1821	1863	1	50
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 s+y+GV+ + grW+A+ r +k ++lg f +e+Aa+a+++a GBG88391.1 1821 SRYRGVTLHT-GGRWEARMRR------KKLIYLGLFTEEEDAARAYDRAV 1863 79****99.9**999......7*****************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 2240 aa Download sequence
MSHSFPATPT DGSRGIGFTE SGRFGNQRCT AMVCTRMTPV HFSSSATSAG SSLFVPRRQL 60 RDASADGDDV HVSTAQPVSA IGCDKLGRSE IGMMVTAREE ETESYCSPSR PAECPAKMVA 120 ADGFRLPLIN NHADPRCARN TAHPHHECIQ AISPARYGHD EGALYLGKDG SHGLESRICQ 180 REWAVNKEVD IPLASSSMAM AAPATLPLAA SQMAPPPTPP AAMAEAVAMT GERMTVVVED 240 SAADVEAAAT ATLDRTPSRA PPPPPQFLFH LAPYGDPGDL TTGGGGGGGG GNDSCSVHCL 300 AVCGDPDGCL TTGGGGGDCA CHVPAGQRSS LSRAALADDS VGTAGLRLAG CRRLESHHHQ 360 HAHRANASSL PLSVPLLSQS LQDIKEGAMR QSLHANRKDE TSDGFPLSTA RDPCFNTYKS 420 NQETGGPNQE GEGLGSVAEP LLGSPYPLDY PLIDLRHTAC DQTQRLPPRV VIRMQACSAD 480 RVSSEHISSS TKRSNRRSSS STSSMGTNGR TKADDGSIAR DIMKREINSE GLVCFSTSSS 540 SSSSPSSTSS SFSLPFHASG LFNGGNESSL SLVLPASAGP TTSSAFPPSS SSSSYSLSQS 600 LHASLLSSNR PSASARPVVD LRWAGSAPGQ NGGPGAETRS PSLVSCPAGN RSAIASLLKR 660 EEDQYLVRQL DQVLNQLQQQ GRHLARTTPL SSGDLHVVKV KREEEEEERS EQGNGQEEQD 720 REEEEEEEAE QKRERRSGHL LAQDGSHSQA TVPVLGDLQP IMITDQSSNG QEKTEGPKHQ 780 QLLVHRQRGR HSQIAMSMPS SSHGLFQSFD NDNRNEMEVK KEKDPLLVYH HSHHHSHHHS 840 YCHSYGCGDP RAPTILRSDL LQALRAQCME QQKQKEKEKE PTRMQEEEDE RDMDKEEEDG 900 EEQKEKENPL RRVHNGQTIV PKTEALQLAV HTRGEEGKEG EKEAEDEKDK QEKEEGAERT 960 AVQTVHSAVH KRLCGVILPV GREMTESGPG AMNPRPLKQL PVLYEQRAFP KLEPELELEL 1020 ELEPRLISVN GQKEEKVVHK AGTGAGTGAG TGAGTRGRAG TATGAGARVM RAGTETGAGT 1080 RARIGPETGA GTGTGTGTGT GRVKTGTGTG TGAVTGAGTG AGTGAGTGAG TGAGTGRART 1140 GTGAGAGTGA GTGRARTGTG TGAGTGTGRV RTGPETRART GAGTGAGTGP EAGAGTRDGT 1200 ATAAGARTGT AIGAGTRAGI GTGSGAGPRR SARGTSSGTG AASEVGPGTE NGPGTGIGTG 1260 TQARTEPAVA TRLTRRVPST RLLRSNQQQQ QQPDETIKTG GGGPASEVPV VKPAGTCYGP 1320 RARSSDYKGV TFCKRKGRWE SYIWVDAKQV YLGGFTTADA AARVYDRAVL KFRGPTAKVN 1380 FTASDYDADM QKVAHLTKEE FVRSLRRQRR CFSCGRSQYR GVKLHKCSHG EARMRRVLIK 1440 KYIYGGLFED EEDAARAYDR ALVRSSGKAA MTNFDFTQYQ GDVDFHKAAA MAARDAGGKS 1500 SDNGARSGAG AASGSGKRGA LIHNNSPNKK IKSDTASKTE ASIPPPPPTR TPPLCHPPPP 1560 GHDRRLSGSV MVAAQDRDIS ISSSVGGEHC RTLTIERRKP TRSVWTKTET DRPMVDKIDS 1620 VRTTEEIGHG TSFATGDGTI GAVSAATEAG PGTDNGPGMS IGTGIVARTE PAVGTRVTRR 1680 VPSTRLPQSN QQQQPEETIK TEGGDPASEP AVSAVKSDGT RYGPKSRSSN YRGVAICRRT 1740 GGWTSCISDG GKQVYLGGFT TADAAARAYD RAVLKFRGPA AELNFTASDY DADLQKVAHL 1800 TKEEYIDSLR RQRRCFSRGR SRYRGVTLHT GGRWEARMRR KKLIYLGLFT EEEDAARAYD 1860 RAVVRSNGKD SVTNFDLSQY QEELDFHKAA TMAARVAGGN SLDNVARSGE GAASGRGKRQ 1920 ALIHTNSPNK KEKLDTTSKT EASIHPPPPP PPTPRTPSCN PTPRTPSCNP TPLSRPPLPP 1980 PPPGHDRTIA AQFRDRDISI SSSVEGEKAT RSVWMTRKTD YQMMDKMDLV RVSEENDQNV 2040 PQLDEALDSF APGGESGSDL LLASAAGEGR RRLPSPEKVP LERWEEIMRQ PLFGNRWITN 2100 SQGQVMCSSA SPWKAWVKRG VVRIADLWDT DRRDWKTAGQ LRSTLAYCHH AERGLEEIID 2160 ATPLSWYSVL KKGPAVNEGD WIKIRGEDNT IMEMSWYGRR SFPATEERAK GSTFDNAVGR 2220 LDLGDGMPPC PPRSVPRSAP

Sequence ? help Back to Top

Protein Sequence Length: 2240 aa Download sequence

MSHSFPATPT DGSRGIGFTE SGRFGNQRCT AMVCTRMTPV HFSSSATSAG SSLFVPRRQL  60
RDASADGDDV HVSTAQPVSA IGCDKLGRSE IGMMVTAREE ETESYCSPSR PAECPAKMVA  120
ADGFRLPLIN NHADPRCARN TAHPHHECIQ AISPARYGHD EGALYLGKDG SHGLESRICQ  180
REWAVNKEVD IPLASSSMAM AAPATLPLAA SQMAPPPTPP AAMAEAVAMT GERMTVVVED  240
SAADVEAAAT ATLDRTPSRA PPPPPQFLFH LAPYGDPGDL TTGGGGGGGG GNDSCSVHCL  300
AVCGDPDGCL TTGGGGGDCA CHVPAGQRSS LSRAALADDS VGTAGLRLAG CRRLESHHHQ  360
HAHRANASSL PLSVPLLSQS LQDIKEGAMR QSLHANRKDE TSDGFPLSTA RDPCFNTYKS  420
NQETGGPNQE GEGLGSVAEP LLGSPYPLDY PLIDLRHTAC DQTQRLPPRV VIRMQACSAD  480
RVSSEHISSS TKRSNRRSSS STSSMGTNGR TKADDGSIAR DIMKREINSE GLVCFSTSSS  540
SSSSPSSTSS SFSLPFHASG LFNGGNESSL SLVLPASAGP TTSSAFPPSS SSSSYSLSQS  600
LHASLLSSNR PSASARPVVD LRWAGSAPGQ NGGPGAETRS PSLVSCPAGN RSAIASLLKR  660
EEDQYLVRQL DQVLNQLQQQ GRHLARTTPL SSGDLHVVKV KREEEEEERS EQGNGQEEQD  720
REEEEEEEAE QKRERRSGHL LAQDGSHSQA TVPVLGDLQP IMITDQSSNG QEKTEGPKHQ  780
QLLVHRQRGR HSQIAMSMPS SSHGLFQSFD NDNRNEMEVK KEKDPLLVYH HSHHHSHHHS  840
YCHSYGCGDP RAPTILRSDL LQALRAQCME QQKQKEKEKE PTRMQEEEDE RDMDKEEEDG  900
EEQKEKENPL RRVHNGQTIV PKTEALQLAV HTRGEEGKEG EKEAEDEKDK QEKEEGAERT  960
AVQTVHSAVH KRLCGVILPV GREMTESGPG AMNPRPLKQL PVLYEQRAFP KLEPELELEL  1020
ELEPRLISVN GQKEEKVVHK AGTGAGTGAG TGAGTRGRAG TATGAGARVM RAGTETGAGT  1080
RARIGPETGA GTGTGTGTGT GRVKTGTGTG TGAVTGAGTG AGTGAGTGAG TGAGTGRART  1140
GTGAGAGTGA GTGRARTGTG TGAGTGTGRV RTGPETRART GAGTGAGTGP EAGAGTRDGT  1200
ATAAGARTGT AIGAGTRAGI GTGSGAGPRR SARGTSSGTG AASEVGPGTE NGPGTGIGTG  1260
TQARTEPAVA TRLTRRVPST RLLRSNQQQQ QQPDETIKTG GGGPASEVPV VKPAGTCYGP  1320
RARSSDYKGV TFCKRKGRWE SYIWVDAKQV YLGGFTTADA AARVYDRAVL KFRGPTAKVN  1380
FTASDYDADM QKVAHLTKEE FVRSLRRQRR CFSCGRSQYR GVKLHKCSHG EARMRRVLIK  1440
KYIYGGLFED EEDAARAYDR ALVRSSGKAA MTNFDFTQYQ GDVDFHKAAA MAARDAGGKS  1500
SDNGARSGAG AASGSGKRGA LIHNNSPNKK IKSDTASKTE ASIPPPPPTR TPPLCHPPPP  1560
GHDRRLSGSV MVAAQDRDIS ISSSVGGEHC RTLTIERRKP TRSVWTKTET DRPMVDKIDS  1620
VRTTEEIGHG TSFATGDGTI GAVSAATEAG PGTDNGPGMS IGTGIVARTE PAVGTRVTRR  1680
VPSTRLPQSN QQQQPEETIK TEGGDPASEP AVSAVKSDGT RYGPKSRSSN YRGVAICRRT  1740
GGWTSCISDG GKQVYLGGFT TADAAARAYD RAVLKFRGPA AELNFTASDY DADLQKVAHL  1800
TKEEYIDSLR RQRRCFSRGR SRYRGVTLHT GGRWEARMRR KKLIYLGLFT EEEDAARAYD  1860
RAVVRSNGKD SVTNFDLSQY QEELDFHKAA TMAARVAGGN SLDNVARSGE GAASGRGKRQ  1920
ALIHTNSPNK KEKLDTTSKT EASIHPPPPP PPTPRTPSCN PTPRTPSCNP TPLSRPPLPP  1980
PPPGHDRTIA AQFRDRDISI SSSVEGEKAT RSVWMTRKTD YQMMDKMDLV RVSEENDQNV  2040
PQLDEALDSF APGGESGSDL LLASAAGEGR RRLPSPEKVP LERWEEIMRQ PLFGNRWITN  2100
SQGQVMCSSA SPWKAWVKRG VVRIADLWDT DRRDWKTAGQ LRSTLAYCHH AERGLEEIID  2160
ATPLSWYSVL KKGPAVNEGD WIKIRGEDNT IMEMSWYGRR SFPATEERAK GSTFDNAVGR  2220
LDLGDGMPPC PPRSVPRSAP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	6e-42	AP2 family protein