PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG86101.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 1149aa MW: 125830 Da PI: 9.3402

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG86101.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	30.7	8.1e-10	965	1049	1	80
trihelix 1 rWtkqevlaLiearr......emeerlr.rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 rW ++e+ + ++a++ ++++++ +gk + Wee+ + +r+ +rs+++Ck +w+ +++ y ++ +++ + s+++s + GBG86101.1 965 RWGEDETVVFLQAKSeqlaarALDSEVKgNGKDPTKVWEEIKADVRRANWNRSAIECKRRWNTVKRWYSRVVDNDTR--SGRQSYWT 1049 8************4444443333333345788999*********************************99998..45565665 PP

Sequence ? help Back to Top
Protein Sequence Length: 1149 aa Download sequence
MESRGPTFVT GEIDVLNVVR ALDHCIPLLI GHLLSISEQA NERMLQHCKA NRKEFALART 60 ANTKGKAPAQ DDNPNPASTS KPIRLGLIQK DYHFLRSKAI SWKSAECDIN VWGIPYNAII 120 DSGASVLAIL QRVVERAGRR KNLIMLTERD HLVSTDEEKI KTVGRMTNVA FRLGKVHALG 180 DVVVLDVSTY DVLLGLPVLT ALRANLDFEK RSIVLRNTGG KPYAIPMRLT LRTVAEATQK 240 TPPVPGGALR MIAWKKLAER SDHQTEEPNL SSDTNNSDED GLVIWELVQQ RVRYPIRQAT 300 TKTSKLTEGN IQRTRALISG EPLMQISRMA DSLEPPRTLY EGTTPLLARF RDKRAFCDIT 360 ELPCSLLTSR KEIRLLRLGA EGKALEPPAR RDTGPHDLGI KILKNNVRWQ DVCDGITPEK 420 HVAIREEDAQ MMATVKFDIR HGFHHILVKE EDRPKTAFVL FEGTCQWVRC PMGICNAPAT 480 FQRAMNVTFQ NFVNKTRLTQ GMISFCVIVY MDDILVYSES FHGHAQHIKW TLGALRDAGF 540 KIALEKSEFF LYEISFLGYV VTRGGLRPNW RKVAVIRDAP TPTSLTQRAF LGLASYYRRF 600 IKGFAAIARP LTNLLRKDQP LSWDAECEQA FSTLKGALAT APILIPPDLA KQFILITDWQ 660 PEAISAILVQ KGNDGREHVI EYTSRTVSDE RRNDSAPQGE WYTVVWGLQH FHFHAQQPSQ 720 GVSLPMWTPC ISPPASATAF PYAQDASVEL VRHGGHLTGL LEWEKLGDRG ICAAGDPVMD 780 AVAEHANSDT QQGRNQAWTA EFPLRSEAND GVQSCMQGAI SEPLAGALAA GTATVAAIAV 840 PSVRVVPAVH VLPPTGAVAV GGVVGAARAL EGGALTRGCG VPGVEDLAAG CALTGGGSRP 900 AAEAVAVGGV APPCGNVAAA EAMPGVAAPP AAASAGTAGG AVPSPARVDK QNTEDVPAKR 960 ATSSRWGEDE TVVFLQAKSE QLAARALDSE VKGNGKDPTK VWEEIKADVR RANWNRSAIE 1020 CKRRWNTVKR WYSRVVDNDT RSGRQSYWTM TPKERAAANL YFNLRKNWFD ILESYNVRNR 1080 VPGSRRRSGG GGSSGACRGS GTMVEEEKRR MRRGQHRITR VVAGGVPLVN VPTSHQLLVL 1140 LLPTDAGPM

Sequence ? help Back to Top

Protein Sequence Length: 1149 aa Download sequence

MESRGPTFVT GEIDVLNVVR ALDHCIPLLI GHLLSISEQA NERMLQHCKA NRKEFALART  60
ANTKGKAPAQ DDNPNPASTS KPIRLGLIQK DYHFLRSKAI SWKSAECDIN VWGIPYNAII  120
DSGASVLAIL QRVVERAGRR KNLIMLTERD HLVSTDEEKI KTVGRMTNVA FRLGKVHALG  180
DVVVLDVSTY DVLLGLPVLT ALRANLDFEK RSIVLRNTGG KPYAIPMRLT LRTVAEATQK  240
TPPVPGGALR MIAWKKLAER SDHQTEEPNL SSDTNNSDED GLVIWELVQQ RVRYPIRQAT  300
TKTSKLTEGN IQRTRALISG EPLMQISRMA DSLEPPRTLY EGTTPLLARF RDKRAFCDIT  360
ELPCSLLTSR KEIRLLRLGA EGKALEPPAR RDTGPHDLGI KILKNNVRWQ DVCDGITPEK  420
HVAIREEDAQ MMATVKFDIR HGFHHILVKE EDRPKTAFVL FEGTCQWVRC PMGICNAPAT  480
FQRAMNVTFQ NFVNKTRLTQ GMISFCVIVY MDDILVYSES FHGHAQHIKW TLGALRDAGF  540
KIALEKSEFF LYEISFLGYV VTRGGLRPNW RKVAVIRDAP TPTSLTQRAF LGLASYYRRF  600
IKGFAAIARP LTNLLRKDQP LSWDAECEQA FSTLKGALAT APILIPPDLA KQFILITDWQ  660
PEAISAILVQ KGNDGREHVI EYTSRTVSDE RRNDSAPQGE WYTVVWGLQH FHFHAQQPSQ  720
GVSLPMWTPC ISPPASATAF PYAQDASVEL VRHGGHLTGL LEWEKLGDRG ICAAGDPVMD  780
AVAEHANSDT QQGRNQAWTA EFPLRSEAND GVQSCMQGAI SEPLAGALAA GTATVAAIAV  840
PSVRVVPAVH VLPPTGAVAV GGVVGAARAL EGGALTRGCG VPGVEDLAAG CALTGGGSRP  900
AAEAVAVGGV APPCGNVAAA EAMPGVAAPP AAASAGTAGG AVPSPARVDK QNTEDVPAKR  960
ATSSRWGEDE TVVFLQAKSE QLAARALDSE VKGNGKDPTK VWEEIKADVR RANWNRSAIE  1020
CKRRWNTVKR WYSRVVDNDT RSGRQSYWTM TPKERAAANL YFNLRKNWFD ILESYNVRNR  1080
VPGSRRRSGG GGSSGACRGS GTMVEEEKRR MRRGQHRITR VVAGGVPLVN VPTSHQLLVL  1140
LLPTDAGPM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1108	1113	KRRMRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	2e-08	Trihelix family protein