PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG86070.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

C2H2

Protein Properties

Length: 941aa MW: 103636 Da PI: 4.5106

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG86070.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00068	914	936	3	23
ETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt..H 23 C Cg++F ++ +L +Hi + H GBG86070.1 914 CATCGQVFDSRNQLFQHITKsgH 936 99***************987666 PP

Sequence ? help Back to Top
Protein Sequence Length: 941 aa Download sequence
MPQCLYEVLE IPRTATADDI KNAYRRLALQ WHPDKNQNRL EEANVRFKEI QNAYDVLRDK 60 QERAWYDSHR EAIVRGGDNY YGSESGVSGY KSSKPENEIN LWPYFSSSAY SGYGSTGKGF 120 YSVYEEVFKH LHRQEQESAA FQGLRIPDPP PLGRQDSPYA EVSAFYNYWL SFATCRDFAW 180 CDEYVVASAP NRKYRRLMEE ENKKLRKKEK KEFNETVRAL AAFVKKRDKR VLERQLEQRR 240 IRAEKEEEEK RRRQEMMKER WEKAQSYEEP EWARVNEDDQ EEFDGDEDDG IADPNSGSYD 300 WARSGTAATA ASGRVGGGGE TETSKATTAG ANVHNELFCI VCSKRFKSEK QWQNHEKSRK 360 HLERVSELKA VLLEEEEATE QATTSSSPAE EALPSSRTAA ARLAAESSSA DPALPKEEDE 420 KGEESASEEE VAAEANERCS HRGNIPPRSA SQSQTSDVSD QQSKEADGRD ADDNATGAAD 480 NNGDNGGGSD DDDACGADGA TVRGGGGGGG GGGGGGGGGS RKGGETISSS ASHSKIHGNI 540 NAGGRGGEQQ KQQEEDDEDD EEEEVGGESE LKKSDKTGSH FEQEEEEEGK EEEEEEEEEE 600 EEEEDHDEDA VLERMLRSSS QRSSEKKAST PLSRNQEEDD EDEETEGREE EEDEGDHDED 660 AVLEWMLRSS SQRSSQKKAS TRFGHDREEA HEDEETAETE EKAGSAEREP GNSEAVTEKE 720 DANPVATEVQ EGNEQREERE EAKKEEGEGE EIGSRSQGKK AKKGRRAVKE KGGGVGKAVS 780 DAAETDRRST PGVEAAPSRT EEGQEAGKEA SQAEGTNRGI ENGKEGIVEN AKTDGADVQK 840 SSRKEKKQKK KDVGISAGGG GMGGNKVLSD GMALQQLLQQ QQQLLLQKGV GGKKGAKAKK 900 ARKEVVEAVI GRLCATCGQV FDSRNQLFQH ITKSGHAAPK G

Sequence ? help Back to Top

Protein Sequence Length: 941 aa Download sequence

MPQCLYEVLE IPRTATADDI KNAYRRLALQ WHPDKNQNRL EEANVRFKEI QNAYDVLRDK  60
QERAWYDSHR EAIVRGGDNY YGSESGVSGY KSSKPENEIN LWPYFSSSAY SGYGSTGKGF  120
YSVYEEVFKH LHRQEQESAA FQGLRIPDPP PLGRQDSPYA EVSAFYNYWL SFATCRDFAW  180
CDEYVVASAP NRKYRRLMEE ENKKLRKKEK KEFNETVRAL AAFVKKRDKR VLERQLEQRR  240
IRAEKEEEEK RRRQEMMKER WEKAQSYEEP EWARVNEDDQ EEFDGDEDDG IADPNSGSYD  300
WARSGTAATA ASGRVGGGGE TETSKATTAG ANVHNELFCI VCSKRFKSEK QWQNHEKSRK  360
HLERVSELKA VLLEEEEATE QATTSSSPAE EALPSSRTAA ARLAAESSSA DPALPKEEDE  420
KGEESASEEE VAAEANERCS HRGNIPPRSA SQSQTSDVSD QQSKEADGRD ADDNATGAAD  480
NNGDNGGGSD DDDACGADGA TVRGGGGGGG GGGGGGGGGS RKGGETISSS ASHSKIHGNI  540
NAGGRGGEQQ KQQEEDDEDD EEEEVGGESE LKKSDKTGSH FEQEEEEEGK EEEEEEEEEE  600
EEEEDHDEDA VLERMLRSSS QRSSEKKAST PLSRNQEEDD EDEETEGREE EEDEGDHDED  660
AVLEWMLRSS SQRSSQKKAS TRFGHDREEA HEDEETAETE EKAGSAEREP GNSEAVTEKE  720
DANPVATEVQ EGNEQREERE EAKKEEGEGE EIGSRSQGKK AKKGRRAVKE KGGGVGKAVS  780
DAAETDRRST PGVEAAPSRT EEGQEAGKEA SQAEGTNRGI ENGKEGIVEN AKTDGADVQK  840
SSRKEKKQKK KDVGISAGGG GMGGNKVLSD GMALQQLLQQ QQQLLLQKGV GGKKGAKAKK  900
ARKEVVEAVI GRLCATCGQV FDSRNQLFQH ITKSGHAAPK G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	192	229	RKYRRLMEEENKKLRKKEKKEFNETVRALAAFVKKRDK
2	203	211	KKLRKKEKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74250.1	3e-59	C2H2 family protein