PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GBG85705.1
Organism
Chara braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
Family Whirly
Protein Properties Length: 419aa    MW: 45860 Da    PI: 5.2078
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GBG85705.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly100.91.2e-3128137541138
      Whirly  41 ataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138
                 a++++kydW+kkq+falsate++ l+     + cef+hdp +++s++G+v+k l v+   dGs +f+ l+v+n++ +++e++++P+ + e av+r ++
  GBG85705.1 281 AIGTQKYDWQKKQVFALSATEIGRLL---VSDECEFYHDPNMGQSKQGQVNKRLTVRLSQDGSAIFFTLEVNNDIENVKEKIQIPLKRDEIAVMRAAF 375
                 89*********************996...5789**************************************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    
MLLSHLPQLA KKQIVLASAS PRRAELLRSL GLKFDVVPSS FEETLVKSSF PTAGDYAAET  60
AMHKAIDVAR KVIMTASSER SDGSTSAVDL VIGADTVVEC AGRILEKPAD EADAVEMLQL  120
LRGRLHEVYT GVALVVPAAA DPAVGTPPLV RLFWEKSSVE FAALDDETIQ AYVATGDPLD  180
KAGGYGIQGP GGTLVKGVQG VCEDVVFSPD VYSRHSRRQE QLDLGSSSVF PTEKGIARWT  240
STDFRVPLCE EHSQTSCQIS TKPVPSLRPY RGQWSEPEPS AIGTQKYDWQ KKQVFALSAT  300
EIGRLLVSDE CEFYHDPNMG QSKQGQVNKR LTVRLSQDGS AIFFTLEVNN DIENVKEKIQ  360
IPLKRDEIAV MRAAFQYILP HLMGWHAIVD PSQAIIAPTT SGEGRGKLLS EKDENVHWE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-33Whirly family protein