PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG85259.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

MYB

Protein Properties

Length: 1328aa MW: 146222 Da PI: 4.7781

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG85259.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.6	1.4e-13	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l GBG85259.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	33	1.4e-10	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l GBG85259.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPAQCLDRYEKLL 103 68***************99.****8..********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1328 aa Download sequence
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPAQCLDRYE KLLDAACAKD ESYEPADDPR 120 RLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIEIKHR KRKQKGIDYA NEIPFEKRPP PGFYDTWKEE HVAQEDPSFV 240 NVTLEELEGK RRVDIEAQLR KQDIARGKVY QRHDAPAAVL QANRLNDPEA VRKRVKLSLP 300 APQVSDRELE EIAKMGYAQD LVNGLDDGGA GGGGGGGGRR TPGGKGDAIM MEAENLARLR 360 SIQTPLMGGE NPTLHPSDFS GVTPKGREVH TPSHIVATPL RTPGGGGGAA AAAAAAGGSA 420 TPSSVVRMTP RGTPVRDELG INEDLDTVSA GGTGMGGSMM GMGEKLREAE LRRNVRESLT 480 GLPTPRNEYH IVIPDLPLKE EEQEAEMEED MAEREIRLKA EKAAMAAAMM KKRSQVVQRG 540 LLRPAAVSSF SSSLRRQLDA PPPPGGGGFS SSVSDIEQAD RLVKAEMLAM FQYDAAMAAE 600 TEAAAPPHAA ADGGGASAAA AAAAAPTGKT KKKSQAKLGA QPNGAAMDDQ ARAEALAAFR 660 VDEFAEAELK EAEKLMAAEE EVLRAAWRHP SLTVEHFAEI EDGFIEDWMY FPSKRGFGLA 720 SVAINAEKRE ALQHEFDQIR GRMEVEAKRA MKMENRLKIV TGGYQKRAEV LRRQLDATVK 780 QVETLHAELE CFKCLHRHEI LAAPRRIEGC QEDVDKMKES ERSLQLRYEN LSVEQENLRR 840 MVEEHEVALR AAKEAAARAA EDMENRMAEM AEAEERIERE AAEAAARKKL EKEKEEEEEE 900 EEKRRRERER ETELQEKKEA AEEEVGQKEG TKETQGINGK SEESNGKKEE IGGKKEEING 960 KKEGGMDGEE AMIESEKEVE EERKAGEKGE ENGGKEAVEK MEEMAVESCA KAGEREERGE 1020 EKAEAKKGEV PVKGMEAAGE REGEETGEEV EREKEEVEGE EMGESGRREV GDEGRKEEQA 1080 ARERRGEREE ETDMDRAREE EKVGGVAADR DAAGKGTENL AGKGTENLAG TDSRRNDTVD 1140 EQTEEATAME VCEMEKRGGQ LSSSTDSGMN DEGKEVADLV DRVRTDSEMK IDDRDVIMEE 1200 GSVREEEPSV KGHMGEEVRQ QEVGRGEGGG GMRTSPLREE RRSAEQHEDE KENGGSLRHA 1260 AAKEGSGDGG NDDDVAADEE RSRSKMSTST PSSSRSSSSS GSPSSSGSSS SSSSEEEEKG 1320 GTKDMSPA

Sequence ? help Back to Top

Protein Sequence Length: 1328 aa Download sequence

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPAQCLDRYE KLLDAACAKD ESYEPADDPR  120
RLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIEIKHR KRKQKGIDYA NEIPFEKRPP PGFYDTWKEE HVAQEDPSFV  240
NVTLEELEGK RRVDIEAQLR KQDIARGKVY QRHDAPAAVL QANRLNDPEA VRKRVKLSLP  300
APQVSDRELE EIAKMGYAQD LVNGLDDGGA GGGGGGGGRR TPGGKGDAIM MEAENLARLR  360
SIQTPLMGGE NPTLHPSDFS GVTPKGREVH TPSHIVATPL RTPGGGGGAA AAAAAAGGSA  420
TPSSVVRMTP RGTPVRDELG INEDLDTVSA GGTGMGGSMM GMGEKLREAE LRRNVRESLT  480
GLPTPRNEYH IVIPDLPLKE EEQEAEMEED MAEREIRLKA EKAAMAAAMM KKRSQVVQRG  540
LLRPAAVSSF SSSLRRQLDA PPPPGGGGFS SSVSDIEQAD RLVKAEMLAM FQYDAAMAAE  600
TEAAAPPHAA ADGGGASAAA AAAAAPTGKT KKKSQAKLGA QPNGAAMDDQ ARAEALAAFR  660
VDEFAEAELK EAEKLMAAEE EVLRAAWRHP SLTVEHFAEI EDGFIEDWMY FPSKRGFGLA  720
SVAINAEKRE ALQHEFDQIR GRMEVEAKRA MKMENRLKIV TGGYQKRAEV LRRQLDATVK  780
QVETLHAELE CFKCLHRHEI LAAPRRIEGC QEDVDKMKES ERSLQLRYEN LSVEQENLRR  840
MVEEHEVALR AAKEAAARAA EDMENRMAEM AEAEERIERE AAEAAARKKL EKEKEEEEEE  900
EEKRRRERER ETELQEKKEA AEEEVGQKEG TKETQGINGK SEESNGKKEE IGGKKEEING  960
KKEGGMDGEE AMIESEKEVE EERKAGEKGE ENGGKEAVEK MEEMAVESCA KAGEREERGE  1020
EKAEAKKGEV PVKGMEAAGE REGEETGEEV EREKEEVEGE EMGESGRREV GDEGRKEEQA  1080
ARERRGEREE ETDMDRAREE EKVGGVAADR DAAGKGTENL AGKGTENLAG TDSRRNDTVD  1140
EQTEEATAME VCEMEKRGGQ LSSSTDSGMN DEGKEVADLV DRVRTDSEMK IDDRDVIMEE  1200
GSVREEEPSV KGHMGEEVRQ QEVGRGEGGG GMRTSPLREE RRSAEQHEDE KENGGSLRHA  1260
AAKEGSGDGG NDDDVAADEE RSRSKMSTST PSSSRSSSSS GSPSSSGSSS SSSSEEEEKG  1320
GTKDMSPA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	203	KRRELKAAGIEIKHRKRK
2	887	904	KRRELKAAGIEIKHRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	MYB family protein