PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG84682.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

C3H

Protein Properties

Length: 1207aa MW: 128269 Da PI: 7.6183

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG84682.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.8	7.9e-08	689	710	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +Cr++a+ G+C++Gd C+F H+p GBG84682.1 689 ICRYYAQ-GYCSRGDGCPFVHSP 710 7****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1207 aa Download sequence
MEQDDEEFEQ LLEEIPRATS APPHLEELQR VYGTHFDDSP FMVLRQDEVT VKPFTDIRCD 60 EHYDTFYKMY SSTKKLPPPM ANRMLFAELP SILSPRASSN HISPFASGLA LESPRSSILQ 120 QRQQQFQLQQ KKQQQQQSQQ QQQEQKHQHQ HQQDDQQQQH QQQQQQQQQQ QQKQQQQQEQ 180 QRQMIARERE EQTLASAFGA LNFAENSSSS SAGSKGVGPV GAKTAGCQGR VDDPNADGRG 240 GGGESIQSSL QSSSSGGGTG GGAGGSPGGA SFDGLVQGNG HARTHSHSRT PSIGRSGGMN 300 GVASSLEAYA AAAAAAAAAS DALDAYSSAM GPTGGGGGVA GGRGGFNSAC DSNLDGFVAR 360 SVGLDHLLTA KRSSPGLESM ASGANGGSDG GFTASSANAA MLESLLRRAS PAPDAGYNGG 420 GRLSLDGLRL GSMPASIDAL AAAAAVAVQA GMFPMSGGAA GGGPGGGAGG VGSLDLYAAA 480 TAAVAAQQHQ QHQQQYPPLD YDVAAYIQAQ QQQQRAQAAA AAIHQAQRIQ QQLEEERLKN 540 RQLLLLQQQQ QQQQQQQQQQ QQQERYYGMM NSGSSGGSIG PYMRSQSPMR HESPVHGGHG 600 MPPSHPPPPP HSLHHQQTAY HKSRGPLQTS AGYEAGWGHQ SLPGNGAIPG GPLPFGGGLA 660 LGGAGGVQNI DHVGRGAGGG QHPGGGCNIC RYYAQGYCSR GDGCPFVHSP ASGGSSGYNR 720 GGPPPVGGGG GGPHGMPGVP QKDPRGIPSP PPPMAIRDDR YPVAFSHKAE TRRSPRRGMP 780 PPPPPPAGAV AAPPVTPAVA RRKSDMMPNG HMNGVYLNGN HAIGGGGLAM GGAHGNGLGV 840 GLHSVPSSRG SGGGNLPEQF DFYNAGQTSP PHSHYAPQQS QPKYQTLEEV EGRIYTIAKD 900 QHGCRFLQRK FDEGGPDDVA KIFAEIIDHM VELMTDPFGN YLIQKLLECC TEPQRRQILD 960 RVAVKSELVN ISLNMHGTRA VQKLIETLTS PDQVQMVTNA LKIGVVTLIK DLNGNHVIQR 1020 CLQKLNTEDN QFIFDAAAQH CVEIATHRHG CCVLQRCVDY ASGAQRQRLV AEIAANALVL 1080 SQDPFGNYVV QYVLDLNLPW ASVEVMVRLE GSYPYLSMQK FSSNVVEKCL KLADDEHRAR 1140 IIRELMASPR LGQLLQDPYA NYVVQSALTY SKGALHSSLV DAICPHLPVL RSSPYGKRIL 1200 SRTNLKK

Sequence ? help Back to Top

Protein Sequence Length: 1207 aa Download sequence

MEQDDEEFEQ LLEEIPRATS APPHLEELQR VYGTHFDDSP FMVLRQDEVT VKPFTDIRCD  60
EHYDTFYKMY SSTKKLPPPM ANRMLFAELP SILSPRASSN HISPFASGLA LESPRSSILQ  120
QRQQQFQLQQ KKQQQQQSQQ QQQEQKHQHQ HQQDDQQQQH QQQQQQQQQQ QQKQQQQQEQ  180
QRQMIARERE EQTLASAFGA LNFAENSSSS SAGSKGVGPV GAKTAGCQGR VDDPNADGRG  240
GGGESIQSSL QSSSSGGGTG GGAGGSPGGA SFDGLVQGNG HARTHSHSRT PSIGRSGGMN  300
GVASSLEAYA AAAAAAAAAS DALDAYSSAM GPTGGGGGVA GGRGGFNSAC DSNLDGFVAR  360
SVGLDHLLTA KRSSPGLESM ASGANGGSDG GFTASSANAA MLESLLRRAS PAPDAGYNGG  420
GRLSLDGLRL GSMPASIDAL AAAAAVAVQA GMFPMSGGAA GGGPGGGAGG VGSLDLYAAA  480
TAAVAAQQHQ QHQQQYPPLD YDVAAYIQAQ QQQQRAQAAA AAIHQAQRIQ QQLEEERLKN  540
RQLLLLQQQQ QQQQQQQQQQ QQQERYYGMM NSGSSGGSIG PYMRSQSPMR HESPVHGGHG  600
MPPSHPPPPP HSLHHQQTAY HKSRGPLQTS AGYEAGWGHQ SLPGNGAIPG GPLPFGGGLA  660
LGGAGGVQNI DHVGRGAGGG QHPGGGCNIC RYYAQGYCSR GDGCPFVHSP ASGGSSGYNR  720
GGPPPVGGGG GGPHGMPGVP QKDPRGIPSP PPPMAIRDDR YPVAFSHKAE TRRSPRRGMP  780
PPPPPPAGAV AAPPVTPAVA RRKSDMMPNG HMNGVYLNGN HAIGGGGLAM GGAHGNGLGV  840
GLHSVPSSRG SGGGNLPEQF DFYNAGQTSP PHSHYAPQQS QPKYQTLEEV EGRIYTIAKD  900
QHGCRFLQRK FDEGGPDDVA KIFAEIIDHM VELMTDPFGN YLIQKLLECC TEPQRRQILD  960
RVAVKSELVN ISLNMHGTRA VQKLIETLTS PDQVQMVTNA LKIGVVTLIK DLNGNHVIQR  1020
CLQKLNTEDN QFIFDAAAQH CVEIATHRHG CCVLQRCVDY ASGAQRQRLV AEIAANALVL  1080
SQDPFGNYVV QYVLDLNLPW ASVEVMVRLE GSYPYLSMQK FSSNVVEKCL KLADDEHRAR  1140
IIRELMASPR LGQLLQDPYA NYVVQSALTY SKGALHSSLV DAICPHLPVL RSSPYGKRIL  1200
SRTNLKK